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2020 – today
- 2024
[j9]Lu Li, Shi Yan, Barbara M. Bakker, Huub C. J. Hoefsloot, Bo Chawes, David Horner, Morten A. Rasmussen
, Age K. Smilde, Evrim Acar:
Analyzing postprandial metabolomics data using multiway models: a simulation study. BMC Bioinform. 25(1): 94 (2024)- 2021
- [j8]Fentaw Abegaz, Anne-Claire M. F. Martines, Marcel A. Vieira-Lara, Melany Rios-Morales, Dirk-Jan Reijngoud, Ernst C. Wit, Barbara M. Bakker:
Bistability in fatty-acid oxidation resulting from substrate inhibition. PLoS Comput. Biol. 17(8) (2021)
2010 – 2019
- 2017
- [j7]Anne-Claire M. F. Martines, Karen van Eunen, Dirk-Jan Reijngoud, Barbara M. Bakker:
The promiscuous enzyme medium-chain 3-keto-acyl-CoA thiolase triggers a vicious cycle in fatty-acid beta-oxidation. PLoS Comput. Biol. 13(4) (2017) - 2014
- [j6]Shodhan Rao, Arjan van der Schaft, Karen van Eunen, Barbara M. Bakker, Bayu Jayawardhana:
A model reduction method for biochemical reaction networks. BMC Syst. Biol. 8: 52 (2014) - 2013
- [j5]Karen van Eunen, Sereh M. J. Simons, Albert Gerding, Aycha Bleeker, Gijs den Besten, Catharina M. L. Touw, Sander M. Houten, Bert K. Groen, Klaas Krab, Dirk-Jan Reijngoud, Barbara M. Bakker:
Biochemical Competition Makes Fatty-Acid β-Oxidation Vulnerable to Substrate Overload. PLoS Comput. Biol. 9(8) (2013) - [j4]Eduard J. Kerkhoven, Fiona Achcar, Vincent P. Alibu, Richard J. Burchmore, Ian H. Gilbert, Maciej Trybilo, Nicole N. Driessen, David R. Gilbert, Rainer Breitling, Barbara M. Bakker, Michael P. Barrett:
Handling Uncertainty in Dynamic Models: The Pentose Phosphate Pathway in Trypanosoma brucei. PLoS Comput. Biol. 9(12) (2013) - [c1]Shodhan Rao, Arjan van der Schaft, Karen van Eunen, Barbara M. Bakker, Bayu Jayawardhana:
Model-order reduction of biochemical reaction networks. ECC 2013: 4502-4507 - 2012
- [j3]Fiona Achcar, Eduard J. Kerkhoven, Barbara M. Bakker, Michael P. Barrett, Rainer Breitling:
Dynamic Modelling under Uncertainty: The Case of Trypanosoma brucei Energy Metabolism. PLoS Comput. Biol. 8(1) (2012) - [j2]Karen van Eunen, José A. L. Kiewiet, Hans V. Westerhoff, Barbara M. Bakker:
Testing Biochemistry Revisited: How In Vivo Metabolism Can Be Understood from In Vitro Enzyme Kinetics. PLoS Comput. Biol. 8(4) (2012) - [i1]Shodhan Rao, Arjan van der Schaft, Karen van Eunen, Barbara M. Bakker, Bayu Jayawardhana:
Model-order reduction of biochemical reaction networks. CoRR abs/1212.2438 (2012)
2000 – 2009
- 2009
- [j1]Marvin Schulz, Barbara M. Bakker, Edda Klipp:
TIde: a software for the systematic scanning of drug targets in kinetic network models. BMC Bioinform. 10: 344 (2009)
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