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ORCIDCarlos Oscar Sánchez Sorzano
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2020 – today
- 2024
[c13]Oier Lauzirika Zarrabeitia, E. Ramírez-Aportela, José María Carazo, Carlos Oscar Sánchez Sorzano:
Fast Global Image Alignment Algorithm for CryoEM through Vector Compression. ISBI 2024: 1-4- 2022
- [j34]Mihaly Varadi
, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar:
PDBe-KB: collaboratively defining the biological context of structural data. Nucleic Acids Res. 50(D1): 534-542 (2022) - 2021
- [j33]José Ramón Macías, Rubén Sánchez García, Pablo Conesa, Erney Ramírez-Aportela, Marta Martínez, Carlos Wert-Carvajal, Alberto M. Parra-Perez, Joan Segura Mora, Sam Horrell, Andrea Thorn, Carlos Oscar Sánchez Sorzano, José María Carazo:
3DBionotes COVID-19 edition. Bioinform. 37(22): 4258-4260 (2021) - 2020
- [j32]Erney Ramírez-Aportela, Jose Luis Vilas, Alisa Glukhova, Roberto Melero, Pablo Conesa, Marta Martínez, David Maluenda, Javier Mota, Amaya Jiménez, Javier Vargas, Roberto Marabini, Patrick M. Sexton, José María Carazo, Carlos Oscar Sánchez Sorzano:
Automatic local resolution-based sharpening of cryo-EM maps. Bioinform. 36(3): 765-772 (2020) - [j31]Marta Martínez, A. Jiménez-Moreno, David Maluenda, Erney Ramírez-Aportela, Roberto Melero, Ana Cuervo, Pablo Conesa, Laura del Cano, Y. C. Fonseca, Rubén Sánchez García, David Strelák, J. J. Conesa, E. Fernández-Giménez, F. de Isidro, Carlos Oscar Sánchez Sorzano, José María Carazo, Roberto Marabini:
Integration of Cryo-EM Model Building Software in Scipion. J. Chem. Inf. Model. 60(5): 2533-2540 (2020)
2010 – 2019
- 2019
- [j30]Rubén Sánchez García, Carlos Oscar Sánchez Sorzano, José María Carazo, Joan Segura:
BIPSPI: a method for the prediction of partner-specific protein-protein interfaces. Bioinform. 35(3): 470-477 (2019) - [j29]Amaya Jiménez, Slavica Jonic, Tomás Majtner, Joaquín Otón, Jose Luis Vilas, David Maluenda, Javier Mota, Erney Ramírez-Aportela, Marta Martínez, Yaiza Rancel, Joan Segura, Rubén Sánchez García, Roberto Melero, Laura del Cano, Pablo Conesa, Lars Skjaerven, Roberto Marabini, José María Carazo, Carlos Oscar Sánchez Sorzano:
Validation of electron microscopy initial models via small angle X-ray scattering curves. Bioinform. 35(14): 2427-2433 (2019) - [j28]Joan Segura, Rubén Sánchez García, Carlos Oscar Sánchez Sorzano, José María Carazo:
3DBIONOTES v3.0: crossing molecular and structural biology data with genomic variations. Bioinform. 35(18): 3512-3513 (2019) - [j27]David Strelák, Carlos Oscar Sánchez Sorzano, José María Carazo, Jiri Filipovic:
A GPU acceleration of 3-D Fourier reconstruction in cryo-EM. Int. J. High Perform. Comput. Appl. 33(5) (2019) - 2018
- [j26]Denis Fortun, Paul Guichard, Virginie Hamel, Carlos Oscar Sánchez Sorzano, Niccolo Banterle, Pierre Gonczy, Michael Unser:
Reconstruction From Multiple Particles for 3D Isotropic Resolution in Fluorescence Microscopy. IEEE Trans. Medical Imaging 37(5): 1235-1246 (2018) - 2017
- [j25]Joan Segura, Rubén Sánchez García, Marta Martínez, Jesús Cuenca Alba, Daniel Tabas-Madrid, Carlos Oscar Sánchez Sorzano, José María Carazo:
3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures. Bioinform. 33(22): 3655-3657 (2017) - [i2]Carlos Oscar Sánchez Sorzano, José María Carazo:
Challenges ahead Electron Microscopy for Structural Biology from the Image Processing point of view. CoRR abs/1701.00326 (2017) - 2016
- [j24]Ana Iriarte, Roberto Marabini, Samuel Matej, Carlos Oscar Sánchez Sorzano, Robert M. Lewitt:
System models for PET statistical iterative reconstruction: A review. Comput. Medical Imaging Graph. 48: 30-48 (2016) - [j23]Charles Kervrann, Scott T. Acton, Jean-Christophe Olivo-Marin, Carlos Oscar Sánchez Sorzano, Michael Unser:
Introduction to the Issue on Advanced Signal Processing in Microscopy and Cell Imaging. IEEE J. Sel. Top. Signal Process. 10(1): 3-5 (2016) - [j22]Charles Kervrann, Carlos Oscar Sánchez Sorzano, Scott T. Acton, Jean-Christophe Olivo-Marin, Michael Unser:
A Guided Tour of Selected Image Processing and Analysis Methods for Fluorescence and Electron Microscopy. IEEE J. Sel. Top. Signal Process. 10(1): 6-30 (2016) - [j21]Slavica Jonic, Carlos Oscar Sánchez Sorzano:
Coarse-Graining of Volumes for Modeling of Structure and Dynamics in Electron Microscopy: Algorithm to Automatically Control Accuracy of Approximation. IEEE J. Sel. Top. Signal Process. 10(1): 161-173 (2016) - 2015
- [j20]Joan Segura, Carlos Oscar Sánchez Sorzano, Jesús Cuenca Alba, Patrick Aloy, José María Carazo:
Using neighborhood cohesiveness to infer interactions between protein domains. Bioinform. 31(15): 2545-2552 (2015) - [j19]Javier Setoain, Mònica Franch, Marta Martínez, Daniel Tabas-Madrid, Carlos Oscar Sánchez Sorzano, Annette Bakker, Eduardo Gonzalez-Couto, Juan Elvira, Alberto D. Pascual-Montano:
NFFinder: an online bioinformatics tool for searching similar transcriptomics experiments in the context of drug repositioning. Nucleic Acids Res. 43(Webserver-Issue): W193-W199 (2015) - [j18]Kin-Man Lam, Carlos Oscar Sánchez Sorzano, Zhilan Zhang, Patrizio Campisi:
Undergraduate Students Compete in the IEEE Signal Processing Cup: Part 1 [sp Education]. IEEE Signal Process. Mag. 32(4): 123-125 (2015) - [j17]Carlos Oscar Sánchez Sorzano, Anik Khan, Forsad Al Hossain, Tawab Ullash, Abu Raihan, Mohammed Ariful Haque, Kai-Wen Liang, Yen-Chen Wu, Guan-Lin Chao, Kuan-Hao Huang, Shao-Hua Sun, Ming-Jen Yang, Po-Wen Hsiao, Ti-Fen Pan, Yi-Ching Chiu, Wei-Chih Tu, Shao-Yi Chien, Emroz Khan, Shiekh Zia Uddin, Mukhlasur Rhaman Tanvir, Md. Kamrul Hasan, Jesús Cuenca Alba:
Undergraduate Students Compete in the IEEE Signal Processing Cup: Part 2 [sp Education]. IEEE Signal Process. Mag. 32(5): 109-111 (2015) - [c12]Ana Iriarte, Gabriel Caffarena, Mariano Lopez-Fernandez, Rodrigo García-Carmona, Abraham Otero, Carlos Oscar Sánchez Sorzano, Roberto Marabini:
Iterative reconstruction for pet scanners with continuous scintillators. EMBC 2015: 2259-2262 - 2014
- [j16]Javier Vargas, Ana-Lucia Álvarez-Cabrera, Roberto Marabini, José María Carazo, Carlos Oscar Sánchez Sorzano:
Efficient initial volume determination from electron microscopy images of single particles. Bioinform. 30(20): 2891-2898 (2014) - [j15]Carlos Oscar Sánchez Sorzano, Javier Vargas, Gabriel Caffarena-Fernández, Ana Iriarte:
Comparing scientific performance among equals. Scientometrics 101(3): 1731-1745 (2014) - [c11]Qiyu Jin, Carlos Oscar Sánchez Sorzano, Isabelle Callebaut, Florence Tama, Slavica Jonic:
Elastic image registration to fully explore macromolecular dynamics by electron microscopy. ICIP 2014: 2075-2079 - [c10]Carlos Oscar Sánchez Sorzano, Javier Vargas, Joaquín Otón, Vahid Abrishami, José Miguel de la Rosa-Trevín, S. del Riego, A. Fernandez-Alderete, C. Martinez-Rey, Roberto Marabini, José María Carazo:
An image processing approach to the simulation of electron microscopy volumes of atomic structures. ICIP 2014: 2095-2099 - [c9]Carlos Oscar Sánchez Sorzano, Javier Vargas, José Miguel de la Rosa-Trevín, Airen Zaldívar-Peraza, Joaquín Otón, Vahid Abrishami, Ignacio Foche, Roberto Marabini, Gabriel Caffarena, José María Carazo:
Outlier detection for single particle analysis in Electron Microscopy. IWBBIO 2014: 950-959 - [c8]Eduardo Garcia de La Cueva, Miguel Mateo de La Puente, Alessandro Deideri, Ana Iriarte, Carlos Oscar Sánchez Sorzano, Gabriel Caffarena:
2D and 3D Alignment for Electron Microscopy via Graphics Processing Units. IWBBIO 2014: 960-971 - [i1]Carlos Oscar Sánchez Sorzano, Javier Vargas, Alberto Domingo Pascual-Montano:
A survey of dimensionality reduction techniques. CoRR abs/1403.2877 (2014) - 2013
- [j14]Vahid Abrishami, Airen Zaldívar-Peraza, José Miguel de la Rosa-Trevín, Javier Vargas, Joaquín Otón, Roberto Marabini, Yoel Shkolnisky, José María Carazo, Carlos Oscar Sánchez Sorzano:
A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs. Bioinform. 29(19): 2460-2468 (2013) - [j13]Rubén Nogales-Cadenas, Slavica Jonic, Florence Tama, A. A. Arteni, Daniel Tabas-Madrid, Miguel Vázquez, Alberto D. Pascual-Montano, Carlos Oscar Sánchez Sorzano:
3DEM Loupe: analysis of macromolecular dynamics using structures from electron microscopy. Nucleic Acids Res. 41(Webserver-Issue): 363-367 (2013) - 2012
- [c7]Carlos Oscar Sánchez Sorzano, Joaquín Otón, Jesús Cuenca Alba, Airen Zaldívar-Perez, Gabriel Caffarena, Javier Sanchez-Jimenez, Cédric Messaoudi, Sergio Marco, Roberto Marabini, José María Carazo:
Image processing for Cellular tomography using soft X-rays. ISBI 2012: 1322 - 2010
- [j12]Jose-Roman Bilbao-Castro, Carlos Oscar Sánchez Sorzano, Inmaculada García, José-Jesús Fernández:
XMSF: Structure-preserving noise reduction and pre-segmentation in microscope tomography. Bioinform. 26(21): 2786-2787 (2010)
2000 – 2009
- 2009
- [j11]Carlos Oscar Sánchez Sorzano, Cédric Messaoudi, Matthias Eibauer, Jose-Roman Bilbao-Castro, Reiner Hegerl, S. Nickell, Sergio Marco, José María Carazo:
Marker-free image registration of electron tomography tilt-series. BMC Bioinform. 10 (2009) - 2008
- [j10]Carlos Oscar Sánchez Sorzano, Javier A. Velázquez-Muriel, Roberto Marabini, Gabor T. Herman, José María Carazo:
Volumetric restrictions in single particle 3DEM reconstruction. Pattern Recognit. 41(2): 616-626 (2008) - [c6]Laura Fernandez-de-Manuel, María J. Ledesma-Carbayo, Julian Atienza-Herrero, Carlos Oscar Sánchez Sorzano, José María Carazo, Andrés Santos:
Flexible image registration for the identification of best fitted protein models in 3D-EM maps. ISBI 2008: 983-986 - 2007
- [j9]Cédric Messaoudi, Thomas Boudier, Carlos Oscar Sánchez Sorzano, Sergio Marco:
TomoJ: tomography software for three-dimensional reconstruction in transmission electron microscopy. BMC Bioinform. 8 (2007) - 2006
- [j8]Carlos Oscar Sánchez Sorzano, Roberto Marabini, Alberto D. Pascual-Montano, Sjors H. W. Scheres, José María Carazo:
Optimization problems in electron microscopy of single particles. Ann. Oper. Res. 148(1): 133-165 (2006) - [j7]Carlos Oscar Sánchez Sorzano, Elena Ortiz, Mariló López, Javier Rodrigo:
Improved Bayesian image denoising based on wavelets with applications to electron microscopy. Pattern Recognit. 39(6): 1205-1213 (2006) - [j6]José-Jesús Fernández, Carlos Oscar Sánchez Sorzano, Roberto Marabini, José María Carazo:
Image processing and 3-D reconstruction in electron microscopy. IEEE Signal Process. Mag. 23(3): 84-94 (2006) - [c5]Ignacio Arganda-Carreras, Carlos Oscar Sánchez Sorzano, Roberto Marabini, José María Carazo, Carlos Ortiz-de-Solorzano, Jan Kybic:
Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization. CVAMIA 2006: 85-95 - [c4]Bartosz Telenczuk, María J. Ledesma-Carbayo, Javier A. Velázquez-Muriel, Carlos Oscar Sánchez Sorzano, José María Carazo, Andrés Santos:
Molecular image registration using mutual information and differential evolution optimization. ISBI 2006: 844-847 - 2005
- [j5]Carlos Oscar Sánchez Sorzano, Roberto Marabini, Gabor T. Herman, José María Carazo:
Multiobjective algorithm parameter optimization using multivariate statistics in three-dimensional electron microscopy reconstruction. Pattern Recognit. 38(12): 2587-2601 (2005) - [j4]Carlos Oscar Sánchez Sorzano, Philippe Thévenaz, Michael Unser:
Elastic registration of biological images using vector-spline regularization. IEEE Trans. Biomed. Eng. 52(4): 652-663 (2005) - [c3]Sjors H. W. Scheres, A. J. Merino, Carlos Oscar Sánchez Sorzano, José María Carazo:
Grid Computing in 3D-EM Image Processing Using Xmipp. CBMS 2005: 561-563 - 2004
- [j3]Jose-Roman Bilbao-Castro, Carlos Oscar Sánchez Sorzano, Inmaculada García, José-Jesús Fernández:
Phan3D: design of biological phantoms in 3D electron microscopy. Bioinform. 20(17): 3286-3288 (2004) - [j2]Roberto Marabini, Carlos Oscar Sánchez Sorzano, Samuel Matej, José-Jesús Fernández, José María Carazo, Gabor T. Herman:
3-D reconstruction of 2-D crystals in real space. IEEE Trans. Image Process. 13(4): 549-561 (2004) - 2002
- [j1]Carlos Oscar Sánchez Sorzano, José María Carazo, Oswaldo Trelles:
Command-line interfaces can be efficiently brought to graphics: COLIMATE (the COmmand LIne MATE). Softw. Pract. Exp. 32(9): 873-887 (2002) - [c2]Roberto Marabini, Gabor T. Herman, Carlos Oscar Sánchez Sorzano, José María Carazo:
Volumetric constraints in 3D tomography applied to electron microscopy. ISBI 2002: 641-644 - [c1]Roberto Marabini, Gabor T. Herman, Carlos Oscar Sánchez Sorzano, José María Carazo, José-Jesús Fernández, Samuel Matej:
3D reconstruction of 2D crystals from projections in real space. ISBI 2002: 689-692
Coauthor Index
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last updated on 2024-09-09 00:18 CEST by the dblp team
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