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ORCIDDesh Ranjan
Person information
- affiliation: Old Dominion University, Norfolk, USA
- affiliation: New Mexico State University, Las Cruces, New Mexico, USA
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2020 – today
- 2024
[i5]Desh Ranjan, Mohammad Zubair:
An AD based library for Efficient Hessian and Hessian-Vector Product Computation on GPU. CoRR abs/2410.22575 (2024)- 2023
- [c57]Mohammad Zubair, Desh Ranjan, Aaron Walden, Gabriel Nastac, Eric J. Nielsen, Boris Diskin, Marc F. Paterno, Samuel Jung, Joshua Hoke Davis:
Efficient GPU Implementation of Automatic Differentiation for Computational Fluid Dynamics. HiPC 2023: 377-386 - [c56]Ioannis Sakiotis
, Kamesh Arumugam, Marc F. Paterno, Desh Ranjan, Balsa Terzic, Mohammad Zubair:
Porting Numerical Integration Codes from CUDA to oneAPI: A Case Study. ISC 2023: 339-358 - [i4]Ioannis Sakiotis, Kamesh Arumugam, Marc F. Paterno, Desh Ranjan, Balsa Terzic, Mohammad Zubair:
Porting numerical integration codes from CUDA to oneAPI: a case study. CoRR abs/2302.05730 (2023) - 2022
- [j35]Eleni Adam, Desh Ranjan, Harold Riethman:
NPGREAT: assembly of human subtelomere regions with the use of ultralong nanopore reads and linked-reads. BMC Bioinform. 23(1): 545 (2022) - [c55]Ioannis Sakiotis, Kamesh Arumugam, Marc F. Paterno, Desh Ranjan, Balsa Terzic, Mohammad Zubair:
m-Cubes: An Efficient and Portable Implementation of Multi-dimensional Integration for GPUs. ISC 2022: 192-209 - [i3]Ioannis Sakiotis, Kamesh Arumugam, Marc F. Paterno, Desh Ranjan, Balsa Terzic, Mohammad Zubair:
m-CUBES An efficient and portable implementation of multi-dimensional integration for gpus. CoRR abs/2202.01753 (2022) - 2021
- [j34]Tunazzina Islam, Desh Ranjan, Mohammad Zubair, Eleanor Young, Ming Xiao, Harold Riethman:
Analysis of Subtelomeric REXTAL Assemblies Using QUAST. IEEE ACM Trans. Comput. Biol. Bioinform. 18(1): 365-372 (2021) - [c54]Ioannis Sakiotis, Kamesh Arumugam, Marc F. Paterno, Desh Ranjan, Balsa Terzic, Mohammad Zubair:
PAGANI: a parallel adaptive GPU algorithm for numerical integration. SC 2021: 83 - [i2]Ioannis Sakiotis, Kamesh Arumugam, Marc F. Paterno, Desh Ranjan, Balsa Terzic, Mohammad Zubair:
PAGANI: A Parallel Adaptive GPU Algorithm for Numerical. CoRR abs/2104.06494 (2021)
2010 – 2019
- 2019
- [c53]Eleni Adam, Tunazzina Islam, Desh Ranjan, Harold Riethman:
Nanopore Guided Assembly of Segmental Duplications Near Telomeres. BIBE 2019: 60-65 - [c52]Ioannis Sakiotis, Kamesh Arumugam, Desh Ranjan, Balsa Terzic, Mohammad Zubair:
Efficient Parallel Multi-bunch Beam-Beam Simulation in Particle Colliders. HiPC 2019: 123-130 - 2018
- [c51]Tunazzina Islam, Desh Ranjan, Eleanor Young, Ming Xiao, Mohammad Zubair, Harold Riethman:
REXTAL: Regional Extension of Assemblies Using Linked-Reads. ISBRA 2018: 63-78 - 2017
- [j33]Abhishek Biswas, Desh Ranjan, Mohammad Zubair, Stephanie Zeil, Kamal Al-Nasr, Jing He:
An Effective Computational Method Incorporating Multiple Secondary Structure Predictions in Topology Determination for Cryo-EM Images. IEEE ACM Trans. Comput. Biol. Bioinform. 14(3): 578-586 (2017) - [c50]Kamesh Arumugam, Desh Ranjan, Mohammad Zubair, Balsa Terzic, Alexander N. Godunov, Tunazzina Islam:
A Machine Learning Approach for Efficient Parallel Simulation of Beam Dynamics on GPUs. ICPP 2017: 462-471 - [c49]Kamesh Arumugam, Ravi Teja Majeti, Desh Ranjan, Mohammad Zubair, Alexander N. Godunov, Balsa Terzic:
GPU-accelerated high-fidelity simulation of beam-beam effects in particle colliders. SummerSim 2017: 5:1-5:12 - 2016
- [c48]Devin Haslam, Mohammad Zubair, Desh Ranjan, Abhishek Biswas, Jing He:
Challenges in matching secondary structures in cryo-EM: An exploration. BIBM 2016: 1714-1719 - [c47]Kamesh Arumugam, Desh Ranjan, Mohammad Zubair, Balsa Terzic, Alexander N. Godunov:
Memory-Efficient Parallel Simulation of Electron Beam Dynamics Using GPUs. HiPC 2016: 212-221 - [c46]Aaron Walden, Sabbir Ahmed Khan, Bálint Joó, Desh Ranjan, Mohammad Zubair:
Optimizing a Multiple Right-Hand Side Dslash Kernel for Intel Knights Corner. ISC Workshops 2016: 390-401 - 2015
- [j32]Abhishek Biswas, David Gauthier, Desh Ranjan, Mohammad Zubair:
ISQuest: finding insertion sequences in prokaryotic sequence fragment data. Bioinform. 31(21): 3406-3412 (2015) - [j31]Abhishek Biswas, Desh Ranjan, Mohammad Zubair, Jing He:
A Dynamic Programming Algorithm for Finding the Optimal Placement of a Secondary Structure Topology in Cryo-EM Data. J. Comput. Biol. 22(9): 837-843 (2015) - [c45]Abhishek Biswas, Desh Ranjan, Mohammad Zubair, Jing He:
A Novel Computational Method for Deriving Protein Secondary Structure Topologies Using Cryo-EM Density Maps and Multiple Secondary Structure Predictions. ISBRA 2015: 60-71 - [c44]Kamesh Arumugam, Desh Ranjan, Mohammad Zubair, Alexander N. Godunov, Balsa Terzic:
High-fidelity simulation of collective effects in electron beams using an innovative parallel method. SummerSim 2015: 31:1-31:10 - 2014
- [j30]Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Lin Chen, Jing He:
Solving the Secondary Structure MatchingProblem in Cryo-EM De Novo ModelingUsing a Constrained $K$-Shortest Path Graph Algorithm. IEEE ACM Trans. Comput. Biol. Bioinform. 11(2): 419-430 (2014) - [c43]Abhishek Biswas, David Gauthier, Desh Ranjan, Mohammad Zubair:
Big data challenges for estimating genome assembler quality. BCB 2014: 653-660 - [c42]Naga Shailaja Dasari, Desh Ranjan, Mohammad Zubair:
ParK: An efficient algorithm for k-core decomposition on multicore processors. IEEE BigData 2014: 9-16 - [c41]Naga Shailaja Dasari, Desh Ranjan, Mohammad Zubair:
pbitMCE: A bit-based approach for maximal clique enumeration on multicore processors. ICPADS 2014: 478-485 - [c40]Naga Shailaja Dasari, Desh Ranjan, Mohammad Zubair:
Maximal clique enumeration for large graphs on hadoop framework. PPAA@PPoPP 2014: 21-30 - 2013
- [j29]Naga Shailaja Dasari, Desh Ranjan, Mohammad Zubair:
High-performance implementation of planted motif problem on multicore and GPU. Concurr. Comput. Pract. Exp. 25(10): 1340-1355 (2013) - [c39]Kamal Al-Nasr, Lin Chen, Desh Ranjan, Mohammad Zubair, Dong Si, Jing He:
A Constrained K-shortest Path Algorithm to Rank the Topologies of the Protein Secondary Structure Elements Detected in CryoEM Volume Maps. BCB 2013: 749 - [c38]Kamesh Arumugam, Alexander N. Godunov, Desh Ranjan, Balsa Terzic, Mohammad Zubair:
A memory efficient algorithm for adaptive multidimensional integration with multiple GPUs. HiPC 2013: 169-175 - [c37]Kamesh Arumugam, Alexander N. Godunov, Desh Ranjan, Balsa Terzic, Mohammad Zubair:
An Efficient Deterministic Parallel Algorithm for Adaptive Multidimensional Numerical Integration on GPUs. ICPP 2013: 486-491 - [c36]Abhishek Biswas, Desh Ranjan, Mohammad Zubair:
Genome Assembly on a Multicore System. TrustCom/ISPA/IUCC 2013: 1233-1240 - 2012
- [j28]Desh Ranjan, Mohammad Zubair:
Vertex isoperimetric parameter of a Computation Graph. Int. J. Found. Comput. Sci. 23(4): 941- (2012) - [j27]Abhishek Biswas, Dong Si, Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Jing He:
Improved Efficiency in Cryo-EM Secondary Structure Topology Determination from Inaccurate Data. J. Bioinform. Comput. Biol. 10(3) (2012) - [j26]Desh Ranjan, John E. Savage, Mohammad Zubair:
Upper and lower I/O bounds for pebbling r-pyramids. J. Discrete Algorithms 14: 2-12 (2012) - [c35]Kamal Al-Nasr, Lin Chen, Dong Si, Desh Ranjan, Mohammad Zubair, Jing He:
Building the initial chain of the proteins through de novo modeling of the cryo-electron microscopy volume data at the medium resolutions. BCB 2012: 490-497 - 2011
- [j25]Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Jing He:
Ranking Valid Topologies of the Secondary Structure Elements Using a Constraint Graph. J. Bioinform. Comput. Biol. 9(3): 415-430 (2011) - [c34]Abhishek Biswas, Dong Si, Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Jing He:
A Constraint Dynamic Graph Approach to Identify the Secondary Structure Topology from cryoEM Density Data in Presence of Errors. BIBM 2011: 160-163 - [c33]Desh Ranjan, John E. Savage, Mohammad Zubair:
Strong I/O Lower Bounds for Binomial and FFT Computation Graphs. COCOON 2011: 134-145 - [c32]Naga Shailaja Dasari, Desh Ranjan, Mohammad Zubair:
High performance implementation of planted motif problem using suffix trees. HPCS 2011: 200-206 - 2010
- [c31]Bindu Simon, Champa Sengupta-Gopalan, Pavan K. Yelavarthi, Desh Ranjan:
Computational and Biological Approach to Understand the 3' UTR-Mediated Posttranscriptional Regulation of Alfalfa Cytosolic Glutamine Synthetase Genes. BICoB 2010: 103-108 - [c30]Naga Shailaja Dasari, Desh Ranjan, Mohammad Zubair:
An efficient multicore implementation of planted motif problem. HPCS 2010: 9-15 - [c29]Desh Ranjan, John E. Savage, Mohammad Zubair:
Upper and Lower I/O Bounds for Pebbling r-Pyramids. IWOCA 2010: 107-120
2000 – 2009
- 2009
- [c28]Brian Cloteaux, Desh Ranjan:
Lower Bounds for Accessing Information on Pure Pointer Machines. FCS 2009: 103-107 - [c27]Inna Pivkina, Desh Ranjan, Jerry Lodder:
Historical sources as a teaching tool. SIGCSE 2009: 401-402 - 2007
- [j24]Devdatt P. Dubhashi, Johan Jonasson, Desh Ranjan:
Positive Influence and Negative Dependence. Comb. Probab. Comput. 16(1): 29-41 (2007) - [c26]Tieming Ji, Desh Ranjan, Jeanne Curry, Mary O'Connell:
Computational Identification of Cis-regulatory Elements Associated with Pungency of Chili Peppers. BIBE 2007: 1188-1192 - [c25]Tieming Ji, K. Gopavarapu, Desh Ranjan, B. Vasudevan, Champa Sengupta-Gopalan, Mary O'Connell:
Tools for Cis-element Recognition and Phylogenetic Tree Construction Based on Conserved Patterns. CATA 2007: 1-6 - 2006
- [j23]Alessandro Dal Palù, Enrico Pontelli, Desh Ranjan:
Sequential and parallel algorithms for the NCA problem on pure pointer machines. Theor. Comput. Sci. 352(1-3): 108-135 (2006) - [c24]Brian Cloteaux, Desh Ranjan:
Some Separation Results Between Classes of Pointer Algorithms. DCFS 2006: 232-240 - [c23]David Pengelley, Inna Pivkina, Desh Ranjan, Karen Villaverde:
A project in algorithms based on a primary historical source about catalan numbers. SIGCSE 2006: 318-322 - 2005
- [j22]Frank Harary, Desh Ranjan:
Identity orientation of complete bipartite graphs. Discret. Math. 290(2/3): 173-182 (2005) - [j21]Enrico Pontelli, Desh Ranjan:
A Simple Optimal Solution for the Temporal Precedence Problem on Pure Pointer Machines. Theory Comput. Syst. 38(1): 115-130 (2005) - [c22]Yao Wu, Enrico Pontelli, Desh Ranjan:
Computational Issues in Exploiting Dependent And-Parallelism in Logic Programming: Leftness Detection in Dynamic Search Trees. LPAR 2005: 79-94 - 2004
- [c21]Jing He, Desh Ranjan, Wen Jiang, Wah Chiu, Michael F. Schmid:
Detecting Local Symmetry Axis in 3-dimensional Virus Structures. APBC 2004: 265-270 - 2003
- [j20]Desh Ranjan, Enrico Pontelli:
The Level-Ancestor problem on Pure Pointer Machines. Inf. Process. Lett. 85(5): 275-283 (2003) - [c20]Tran Cao Son, Enrico Pontelli, Desh Ranjan, Brook Milligan, Gopal Gupta:
An Agent-based Domain Specific Framework for Rapid Prototyping of Applications in Evolutionary Biology. DALT 2003: 76-96 - [c19]Yao Wu, Enrico Pontelli, Desh Ranjan:
On the Complexity of Dependent And-Parallelism in Logic Programming. ICLP 2003: 361-376 - 2002
- [j19]Enrico Pontelli, Desh Ranjan, Alessandro Dal Palù:
An optimal data structure to handle dynamic environments in non-deterministic computations. Comput. Lang. Syst. Struct. 28(2): 181-201 (2002) - [j18]Natsuhiko Futamura, Srinivas Aluru, Desh Ranjan, Bhanu Hariharan:
Efficient Parallel Algorithms for Solvent Accessible Surface Area of Proteins. IEEE Trans. Parallel Distributed Syst. 13(6): 544-555 (2002) - [c18]Enrico Pontelli, Desh Ranjan, Brook Milligan, Gopal Gupta:
F-LOG: A Domain Specific Language for Solving Phylogenetic Inference Problems. CSB 2002: 9-20 - [c17]Alessandro Dal Palù, Enrico Pontelli, Desh Ranjan:
An Efficient Parallel Pointer Machine Algorithm for the NCA Problem. IFIP TCS 2002: 157-168 - [c16]Enrico Pontelli, Desh Ranjan:
Ancestor Problems on Pure Pointer Machines. LATIN 2002: 263-277 - [c15]Gopal Gupta, Hai-Feng Guo, Arthur I. Karshmer, Enrico Pontelli, Juan Raymundo Iglesias, Desh Ranjan, Brook Milligan, Nayana Datta, Omar El-Khatib, Mohammed Noamany, Xinhong Zhou:
Semantics-Based Filtering: Logic Programming's Killer App? PADL 2002: 82-100 - [c14]Alessandro Dal Palù, Enrico Pontelli, Desh Ranjan:
An Optimal Algorithm for Finding NCA on Pure Pointer Machines. SWAT 2002: 428-438 - 2001
- [c13]Juan Raymundo Iglesias, Gopal Gupta, Enrico Pontelli, Desh Ranjan, Brook Milligan:
Interoperability between Bioinformatics Tools: A Logic Programming Approach. PADL 2001: 153-168 - 2000
- [j17]Desh Ranjan, Enrico Pontelli, Gopal Gupta:
Data structures for order-sensitive predicates in parallel nondeterministic systems. Acta Informatica 37(1): 21-43 (2000) - [j16]Desh Ranjan, Enrico Pontelli, Gopal Gupta, Luc Longpré:
The Temporal Precedence Problem. Algorithmica 28(3): 288-306 (2000)
1990 – 1999
- 1999
- [j15]Enrico Pontelli, Desh Ranjan, Gopal Gupta:
Complexity Analysis of Late Binding in Dynamic Object-Oriented Languages. J. Funct. Log. Program. 1999(Special Issue 2) (1999) - [j14]Desh Ranjan, Enrico Pontelli, Gopal Gupta:
On the Complexity of Or-Parallelism. New Gener. Comput. 17(3): 285-307 (1999) - [c12]Srinivas Aluru, Desh Ranjan, Natsuhiko Futamura:
A Parallel Monte Carlo Algorithm for Protein Accessible Surface Area Computation. HiPC 1999: 339-348 - 1998
- [j13]Frank Harary, Desh Ranjan:
Breaking Symmetry in Complete Graphs by Orienting Edges: Asymptotic Bounds. Inf. Process. Lett. 67(5): 227-230 (1998) - [j12]Desh Ranjan, Enrico Pontelli, Gopal Gupta:
Efficient Algorithms for the Temporal Precedence Problem. Inf. Process. Lett. 68(2): 71-81 (1998) - [j11]Bernd Borchert, Desh Ranjan, Frank Stephan:
On the Computational Complexity of Some Classical Equivalence Relations on Boolean Functions. Theory Comput. Syst. 31(6): 679-693 (1998) - [j10]Devdatt P. Dubhashi, Desh Ranjan:
Balls and bins: A study in negative dependence. Random Struct. Algorithms 13(2): 99-124 (1998) - [c11]Enrico Pontelli, Desh Ranjan, Gopal Gupta:
The Complexity of Late-Binding in Dynamic Object-Oriented Languages. PLILP/ALP 1998: 213-229 - 1997
- [j9]Tetsuo Asano, Desh Ranjan, Thomas Roos, Emo Welzl, Peter Widmayer:
Space-Filling Curves and Their Use in the Design of Geometric Data Structures. Theor. Comput. Sci. 181(1): 3-15 (1997) - [c10]Enrico Pontelli, Desh Ranjan, Gopal Gupta:
On the Complexity of Parallel Implementation of Logic Programs. FSTTCS 1997: 123-137 - 1996
- [i1]Bernd Borchert, Desh Ranjan, Frank Stephan:
On the Computational Complexity of some Classical Equivalence Relations on Boolean Functions. Electron. Colloquium Comput. Complex. TR96 (1996) - 1995
- [j8]Hing Leung, Desh Ranjan, Héctor J. Hernández, D. T. Tang, Agustin González:
A Simple Proof on the Decidability of Equivalence Between Recursive and Nonrecursive Datalog Programs. Inf. Process. Lett. 55(5): 279-282 (1995) - [c9]Tetsuo Asano, Desh Ranjan, Thomas Roos, Emo Welzl, Peter Widmayer:
Space Filling Curves and Their Use in the Design of Geometric Data Structures. LATIN 1995: 36-48 - 1994
- [j7]Richard Chang, Benny Chor, Oded Goldreich, Juris Hartmanis, Johan Håstad, Desh Ranjan, Pankaj Rohatgi:
The Random Oracle Hypothesis Is False. J. Comput. Syst. Sci. 49(1): 24-39 (1994) - 1993
- [j6]Desh Ranjan, Suresh Chari, Pankaj Rohatgi:
Improving Known Solutions is Hard. Comput. Complex. 3: 168-185 (1993) - [j5]Desh Ranjan, Daniela Rus:
A Tool for the Analysis of Manipulation. Inf. Process. Lett. 45(3): 117-121 (1993) - [j4]Alessandro Panconesi, Desh Ranjan:
Quantifiers and Approximation. Theor. Comput. Sci. 107(1): 145-163 (1993) - [c8]Devdatt P. Dubhashi, Kurt Mehlhorn, Desh Ranjan, Christian Thiel:
Searching, Sorting and Randomised Algorithms for Central Elements and Ideal Counting in Posets. FSTTCS 1993: 436-443 - [p2]Juris Hartmanis, Richard Chang, Desh Ranjan, Pankaj Rohatgi:
On IP = PSPACE and Theorems with Narrow Proofs. Current Trends in Theoretical Computer Science 1993: 484-493 - [p1]Juris Hartmanis, Richard Chang, Suresh Chari, Desh Ranjan, Pankaj Rohatgi:
Relativization: a Revisionistic Retrospective. Current Trends in Theoretical Computer Science 1993: 537-548 - 1992
- [b1]Desh Ranjan:
Issues in NP-optimization and Approximation. Cornell University, USA, 1992 - [j3]Richard Chang, Suresh Chari, Desh Ranjan, Pankaj Rohatgi:
Relativization: a revisionistic retrospective. Bull. EATCS 47: 144-153 (1992) - [c7]Desh Ranjan, Pankaj Rohatgi:
On Randomized Reductions to Sparse Sets. SCT 1992: 239-242 - [c6]Suresh Chari, Desh Ranjan, Pankaj Rohatgi:
On the Complexity of Incremental Computation. MFCS 1992: 172-180 - 1991
- [j2]Desh Ranjan, Richard Chang, Juris Hartmanis:
Space Bounded Computations: Review and New Separation Results. Theor. Comput. Sci. 80(2): 289-302 (1991) - [c5]Desh Ranjan, Suresh Chari, Pankaj Rohatgi:
Improving Known Solutions is Hard. ICALP 1991: 381-392 - 1990
- [j1]Juris Hartmanis, Richard Chang, Desh Ranjan, Pankaj Rohatgi:
On Unique Staisfiability and Randomized Reductions. Bull. EATCS 41: 166-174 (1990) - [c4]Alessandro Panconesi, Desh Ranjan:
Quantifiers and Approximation (Abstract). SCT 1990: 244 - [c3]Alessandro Panconesi, Desh Ranjan:
Quantifiers and Approximation (Extended Abstract). STOC 1990: 446-456 - [c2]Juris Hartmanis, Richard Chang, Desh Ranjan, Pankaj Rohatgi:
Structural Complexity Theory: recent Surprises. SWAT 1990: 1-12
1980 – 1989
- 1989
- [c1]Juris Hartmanis, Desh Ranjan:
Space Bounded Computations: Review And New Separation Results. MFCS 1989: 49-66
Coauthor Index
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