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BioData Mining, Volume 10
Volume 10, Number 1, December 2017
- Wei Wu, Zhiheng Wang, Peisheng Cong, Tonghua Li:
Accurate prediction of protein relative solvent accessibility using a balanced model. 1:1-1:14 - Sunghwan Kim, Jae-Hwan Jhong
, Jung-Jun Lee, Ja-Yong Koo:
Meta-analytic support vector machine for integrating multiple omics data. 2:1-2:14 - Hyeonjeong Lee, Miyoung Shin:
Mining pathway associations for disease-related pathway activity analysis based on gene expression and methylation data. 3:1-3:13 - Wei Du, Zhongbo Cao, Tianci Song, Ying Li, Yanchun Liang:
A feature selection method based on multiple kernel learning with expression profiles of different types. 4:1-4:16 - Xing Ren, Qiang Hu, Song Liu, Jianmin Wang, Jeffrey C. Miecznikowski:
Gene set analysis controlling for length bias in RNA-seq experiments. 5:1-5:18 - Fan Zhang, Jie-Diao Lin, Xiao-Yu Zuo, Yi-Xuan Zhuang, Chao-Qun Hong, Guo-Jun Zhang, Xiao-Jiang Cui, Yu-Kun Cui:
Elevated transcriptional levels of aldolase A (ALDOA) associates with cell cycle-related genes in patients with NSCLC and several solid tumors. 6:1-6:20 - Hossein Mohammadhassanzadeh
, William Van Woensel, Samina Raza Abidi
, Syed Sibte Raza Abidi
:
Semantics-based plausible reasoning to extend the knowledge coverage of medical knowledge bases for improved clinical decision support. 7:1-7:31 - Sunghwan Kim, Jae-Hwan Jhong, Jung-Jun Lee, Ja-Yong Koo:
Erratum to: Meta-analytic support vector machine for integrating multiple omics data. 8:1-8:2 - Musaddeque Ahmed
, Richard C. Sallari, Haiyang Guo
, Jason H. Moore
, Housheng H. He
, Mathieu Lupien
:
Variant Set Enrichment: an R package to identify disease-associated functional genomic regions. 9:1-9:5 - Petr G. Lokhov
, Dmitri L. Maslov
, Oleg N. Kharibin, Elena E. Balashova, Alexander I. Archakov:
Label-free data standardization for clinical metabolomics. 10:1-10:12 - Elishai Ezra Tsur
:
Rapid development of entity-based data models for bioinformatics with persistence object-oriented design and structured interfaces. 11:1-11:12 - Nestor Rodriguez, Sergio Rojas Galeano:
Discovering feature relevancy and dependency by kernel-guided probabilistic model-building evolution. 12:1-12:19 - Nathaniel Crabtree, Jason H. Moore
, John F. Bowyer, Nysia I. George:
Multi-class computational evolution: development, benchmark evaluation and application to RNA-Seq biomarker discovery. 13:1-13:18 - Madhav Sigdel, Imren Dinç, Madhu S. Sigdel, Semih Dinç, Marc L. Pusey, Ramazan Savas Aygün:
Feature analysis for classification of trace fluorescent labeled protein crystallization images. 14:1-14:35 - Ngoc Cam Pham
, Benjamin Haibe-Kains
, Pau Bellot
, Gianluca Bontempi
, Patrick E. Meyer:
Study of Meta-analysis strategies for network inference using information-theoretic approaches. 15:1-15:14 - Bilguunzaya Battogtokh
, Majid Mojirsheibani, James Malley:
The optimal crowd learning machine. 16:1-16:12 - Lucas P. P. Braga
, Rafael F. Alves, Marina T. F. Dellias
, Acacio A. Navarrete
, Thiago O. Basso
, Siu M. Tsai:
Vinasse fertirrigation alters soil resistome dynamics: an analysis based on metagenomic profiles. 17:1-17:7 - Vinicius Tragante
, Johannes M. I. H. Gho, Janine F. Felix, Ramachandran S. Vasan, Nicholas L. Smith, Benjamin F. Voight
, Colin Palmer
, Pim van der Harst, Jason H. Moore, Folkert W. Asselbergs
:
Gene Set Enrichment Analyses: lessons learned from the heart failure phenotype. 18:1-18:11 - Jason H. Moore, Peter C. Andrews, Randal S. Olson, Sarah E. Carlson
, Curt Larock, Mario J. Bulhoes, James P. O'Connor, Ellen M. Greytak
, Steven Armentrout:
Grid-based stochastic search for hierarchical gene-gene interactions in population-based genetic studies of common human diseases. 19:1-19:16 - Yulan Liang
, Arpad Kelemen:
Computational dynamic approaches for temporal omics data with applications to systems medicine. 20:1-20:20 - Ursula Neumann, Nikita Genze, Dominik Heider
:
EFS: an ensemble feature selection tool implemented as R-package and web-application. 21:1-21:9 - Artem Lysenko
, Keith A. Boroevich
, Tatsuhiko Tsunoda
:
Arete - candidate gene prioritization using biological network topology with additional evidence types. 22:1-22:12 - Yingxia Sun, Junliang Shang, Jin-Xing Liu, Shengjun Li, Chun-Hou Zheng:
epiACO - a method for identifying epistasis based on ant Colony optimization algorithm. 23:1-23:17 - Nelson Perdigao
, Agostinho C. Rosa
, Seán I. O'Donoghue
:
The Dark Proteome Database. 24:1-24:11 - Emily Rose Holzinger, Shefali S. Verma, Carrie Colleen Buchanan Moore, Molly A. Hall, Rishika De, Diane Gilbert-Diamond, Matthew B. Lanktree
, Nathan Pankratz
, Antoinette Amuzu, Amber Burt, Caroline Dale
, Scott M. Dudek, Clement E. Furlong, Tom R. Gaunt
, Daniel Seung Kim
, Helene Riess, Suthesh Sivapalaratnam, Vinicius Tragante
, Erik P. A. van Iperen, Ariel Brautbar, David S. Carrell, David R. Crosslin, Gail P. Jarvik, Helena Kuivaniemi
, Iftikhar J. Kullo, Eric B. Larson, Laura J. Rasmussen-Torvik
, Gerard Tromp
, Jens Baumert, Karen J. Cruickshanks, Martin Farrall, Aroon D. Hingorani
, G. K. Hovingh, Marcus E. Kleber, Barbara E. Klein, Ronald Klein, Wolfgang Koenig
, Leslie A. Lange, Winfried März, Kari E. North, N. Charlotte Onland-Moret
, Alex P. Reiner, Philippa J. Talmud, Yvonne T. van der Schouw, James G. Wilson, Mika Kivimäki
, Meena Kumari
, Jason H. Moore, Fotios Drenos
, Folkert W. Asselbergs
, Brendan J. Keating, Marylyn D. Ritchie:
Discovery and replication of SNP-SNP interactions for quantitative lipid traits in over 60,000 individuals. 25:1-25:20 - Moshe Sipper
, Randal S. Olson, Jason H. Moore
:
Evolutionary computation: the next major transition of artificial intelligence? 26:1-26:3 - Antonino Fiannaca
, Massimo La Rosa, Laura La Paglia, Riccardo Rizzo, Alfonso Urso:
nRC: non-coding RNA Classifier based on structural features. 27:1-27:18 - William B. Langdon, Brian Yee Hong Lam
:
Genetically improved BarraCUDA. 28:1-28:11 - Mina Moradi Kordmahalleh, Mohammad Gorji Sefidmazgi
, Scott H. Harrison, Abdollah Homaifar:
Identifying time-delayed gene regulatory networks via an evolvable hierarchical recurrent neural network. 29:1-29:25 - Bork A. Berghoff, Torgny Karlsson, Thomas Källman, E. Gerhart H. Wagner, Manfred G. Grabherr
:
RNA-sequence data normalization through in silico prediction of reference genes: the bacterial response to DNA damage as case study. 30:1-30:20 - Spiros C. Denaxas
, Kenan Direk
, Arturo Gonzalez-Izquierdo
, Maria Pikoula
, Sera Aylin Cakiroglu
, Jason H. Moore, Harry Hemingway
, Liam Smeeth
:
Methods for enhancing the reproducibility of biomedical research findings using electronic health records. 31:1-31:19 - Elpidio-Emmanuel Gonzalez-Valbuena, Victor Trevino
:
Metrics to estimate differential co-expression networks. 32:1-32:15 - Indrani Ray, Anindya Bhattacharya, Rajat K. De
:
OCDD: an obesity and co-morbid disease database. 33:1-33:11 - Moshe Sipper
, Jason H. Moore:
Artificial intelligence: more human with human. 34:1-34:2 - Davide Chicco
:
Ten quick tips for machine learning in computational biology. 35:1-35:17 - Randal S. Olson, William G. La Cava
, Patryk Orzechowski
, Ryan J. Urbanowicz
, Jason H. Moore:
PMLB: a large benchmark suite for machine learning evaluation and comparison. 36:1-36:13 - Luluah Al-Husain
, Alaaeldin M. Hafez:
Cluster ensemble based on Random Forests for genetic data. 37:1-37:25 - J. Grey Monroe
, Zachariah A. Allen, Paul Tanger, Jack L. Mullen, John T. Lovell, Brook T. Moyers
, L. Darrell Whitley, John K. McKay:
TSPmap, a tool making use of traveling salesperson problem solvers in the efficient and accurate construction of high-density genetic linkage maps. 38:1-38:15 - Zhenqiu Liu
, Fengzhu Sun, Dermot P. B. McGovern:
Sparse generalized linear model with L 0 approximation for feature selection and prediction with big omics data. 39:1-39:12 - Qiwei Xie, Xi Chen, Hao Deng, Danqian Liu
, Yingyu Sun, Xiaojuan Zhou, Yang Yang, Hua Han:
An automated pipeline for bouton, spine, and synapse detection of in vivo two-photon images. 40:1-40:23 - Andrej Copar, Marinka Zitnik, Blaz Zupan
:
Scalable non-negative matrix tri-factorization. 41:1-41:16
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