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ORCIDJournal of Biomedical Semantics, Volume 15
Volume 15, Number 1, December 2024
- Rabia Azzi, Georgeta Bordea, Romain Griffier, Jean Noël Nikiema
, Fleur Mougin:
Enriching the FIDEO ontology with food-drug interactions from online knowledge sources. 1 - Adrien Bibal, Nourah M. Salem, Rémi Cardon, Elizabeth K. White, Daniel E. Acuna, Robin Burke, Lawrence E. Hunter:
RecSOI: recommending research directions using statements of ignorance. 2 - Christian Witte, David M. Schmidt, Philipp Cimiano:
Comparing generative and extractive approaches to information extraction from abstracts describing randomized clinical trials. 3 - Anthony Huffman, Xumeng Zhang, Meghana Lanka, Jie Zheng, Anna Maria Masci, Yongqun He:
Ontological representation, modeling, and analysis of parasite vaccines. 4 - Daniel N. Sosa, Georgiana Neculae, Julien Fauqueur, Russ B. Altman:
Elucidating the semantics-topology trade-off for knowledge inference-based pharmacological discovery. 5 - Rashmie Abeysinghe, Fengbo Zheng, Jay Shi, Samden D. Lhatoo, Licong Cui:
Leveraging logical definitions and lexical features to detect missing IS-A relations in biomedical terminologies. 6 - Lars Vogt, Tobias Kuhn, Robert Hoehndorf:
Semantic units: organizing knowledge graphs into semantically meaningful units of representation. 7 - Benjamin Molinet, Santiago Marro, Elena Cabrio, Serena Villata:
Explanatory argumentation in natural language for correct and incorrect medical diagnoses. 8 - Mathias De Brouwer, Pieter Bonte, Dörthe Arndt, Miel Vander Sande, Anastasia Dimou, Ruben Verborgh, Filip De Turck, Femke Ongenae:
Optimized continuous homecare provisioning through distributed data-driven semantic services and cross-organizational workflows. 9 - Lars Vogt, Tobias Kuhn, Robert Hoehndorf:
Correction to: Semantic units: organizing knowledge graphs into semantically meaningful units of representation. 10 - Abdullateef I. Almudaifer, Whitney L. Covington, JaMor Hairston, Zachary Deitch, Ankit Anand, Caleb M. Carroll, Estera Crisan, William Bradford, Lauren Walter, Ellen F. Eaton, Sue S. Feldman, John D. Osborne:
Multi-task transfer learning for the prediction of entity modifiers in clinical text: application to opioid use disorder case detection. 11 - Jie Zheng, Xingxian Li, Anna Maria Masci, Hayleigh Kahn, Anthony Huffman, Eliyas Asfaw, Yuanyi Pan, Jinjing Guo, Virginia He, Justin Song, Andrey I. Seleznev, Asiyah Yu Lin, Yongqun He:
Empowering standardization of cancer vaccines through ontology: enhanced modeling and data analysis. 12 - Sarah Mullin, Robert A. McDougal, Kei-Hoi Cheung, Halil Kilicoglu, Amanda Beck, Caroline J. Zeiss:
Chemical entity normalization for successful translational development of Alzheimer's disease and dementia therapeutics. 13 - Jianfu Li, Yiming Li, Yuanyi Pan, Jinjing Guo, Zenan Sun, Fang Li, Yongqun He, Cui Tao:
Mapping vaccine names in clinical trials to vaccine ontology using cascaded fine-tuned domain-specific language models. 14 - William D. Duncan, Matthew Diller, Damion M. Dooley, William R. Hogan, John Beverley:
Concretizing plan specifications as realizables within the OBO foundry. 15 - Guglielmo Faggioli, Laura Menotti, Stefano Marchesin, Adriano Chiò, Arianna Dagliati, Mamede de Carvalho, Marta Gromicho, Umberto Manera, Eleonora Tavazzi, Giorgio Maria Di Nunzio, Gianmaria Silvello, Nicola Ferro:
An extensible and unifying approach to retrospective clinical data modeling: the BrainTeaser Ontology. 16 - Beata Fonferko-Shadrach, Huw Strafford, Carys Jones, Russell A. Khan, Sharon Brown, Jenny Edwards, Jonathan Hawken, Luke E. Shrimpton, Catharine P. White, Robert Powell, Inder M. S. Sawhney, William Owen Pickrell, Arron Lacey:
Annotation of epilepsy clinic letters for natural language processing. 17 - Houcemeddine Turki, Bonaventure F. P. Dossou, Chris Chinenye Emezue, Abraham Toluwase Owodunni, Mohamed Ali Hadj Taieb, Mohamed Ben Aouicha, Hanen Ben Hassen, Afif Masmoudi:
MeSH2Matrix: combining MeSH keywords and machine learning for biomedical relation classification based on PubMed. 18 - Sabrina Toro, Anna V. Anagnostopoulos, Susan M. Bello, Kai Blumberg, Rhiannon Cameron, Leigh Carmody, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Petra Fey, Pascale Gaudet, Nomi L. Harris, Marcin P. Joachimiak, Leila Kiani, Tiago Lubiana, Monica C. Munoz-Torres, Shawn T. O'Neil, David Osumi-Sutherland, Aleix Puig-Barbe, Justin T. Reese, Leonore Reiser, Sofia M. C. Robb, Troy Ruemping, James Seager, Eric Sid, Raymund Stefancsik, Magalie Weber, Valerie Wood, Melissa A. Haendel, Christopher J. Mungall:
Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI). 19
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