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ORCIDComputational Biology and Chemistry, Volume 47
Volume 47, December 2013
- Akintunde Emiola, Paolo Falcarin
, Joanne Tocher, John George:
A model for the proteolytic regulation of LpxC in the lipopolysaccharide pathway of Escherichia coli. 1-7 - Jing Sun, Runyu Jing, Yuelong Wang, Tuanfei Zhu, Menglong Li, Yizhou Li:
PPM-Dom: A novel method for domain position prediction. 8-15 - Sedigheh Mahdavi, Ali Salehzadeh-Yazdi, Ali Mohades, Ali Masoudi-Nejad:
Computational structure analysis of biomacromolecule complexes by interface geometry. 16-23 - Jorge Eduardo Macías-Díaz, Siegfried Macías, Iliana E. Medina-Ramírez:
An efficient nonlinear finite-difference approach in the computational modeling of the dynamics of a nonlinear diffusion-reaction equation in microbial ecology. 24-30 - Diego Masone, Facundo Ciocco Aloia, Mario G. Del Pópolo:
H-bond refinement for electron transfer membrane-bound protein-protein complexes: Cytochrome c oxidase and cytochrome c552. 31-36 - Aboul Ella Hassanien, Eiman Tamah Al-Shammari, Neveen I. Ghali:
Computational intelligence techniques in bioinformatics. 37-47 - Sajid Rashid, Zahida Parveen, Saba Ferdous, Nousheen Bibi:
Mutually exclusive binding of APPLPH to BAR domain and Reptin regulates β-catenin dependent transcriptional events. 48-55 - Zheng Shi, Zijie Wang, Huailong Xu, Yang Tian, Xin Li, Jinku Bao, Surong Sun, Bisong Yue:
Modeling, docking and dynamics simulations of a non-specific lipid transfer protein from Peganum harmala L. 56-65 - Andrei Izvolski, Jaak Järv, Aleksei Kuznetsov:
Computer modeling of the dynamic properties of the cAMP-dependent protein kinase catalytic subunit. 66-70 - Priyadarshini Murahari, Sharmila Anishetty, Pennathur Gautam:
Understanding the lid movements of LolA in Escherichia coli using molecular dynamics simulation and in silico point mutation. 71-80 - Jayita Saha, Kamala Gupta, Bhaskar Gupta:
In silico characterization and evolutionary analyses of CCAAT binding proteins in the lycophyte plant Selaginella moellendorffii genome: A growing comparative genomics resource. 81-88 - Mikhail A. Iakhiaev, Alexei V. Iakhiaev:
Mapping the intramolecular signal propagation pathways in protein using Bayesian change point analysis of atomic motions. 89-95 - Andrea Balderrama-Subieta, Jorge Quillaguamán:
Genomic studies on nitrogen metabolism in Halomonas boliviensis: Metabolic pathway, biochemistry and evolution. 96-104 - Suncica Z. Borozan, Blagoje P. Dimitrijevic, Srdan D. Stojanovic:
Cation-π interactions in high resolution protein-RNA complex crystal structures. 105-112 - Tianhong Pan, Swanand R. Khare, Fred Ackah, Biao Huang, Weiping Zhang, Stephan Gabos, Can Jin, Melinda Stampfl:
In vitro cytotoxicity assessment based on KC50 with real-time cell analyzer (RTCA) assay. 113-120 - Claire Wilsey, Jessica Gurka, David Toth, Jimmy Franco:
A large scale virtual screen of DprE1. 121-125 - Mostafa H. Ahmed, Mesay Habtemariam, Martin K. Safo, J. Neel Scarsdale, Francesca Spyrakis, Pietro Cozzini, Andrea Mozzarelli, Glen E. Kellogg:
Unintended consequences? Water molecules at biological and crystallographic protein-protein interfaces. 126-141 - Jingfa Liu, Yuanyuan Sun, Gang Li, Beibei Song, Weibo Huang:
Heuristic-based tabu search algorithm for folding two-dimensional AB off-lattice model proteins. 142-148 - Anuja Kulkarni, Laxmi Ananthanarayan, Karthik Raman:
Identification of putative and potential cross-reactive chickpea (Cicer arietinum) allergens through an in silico approach. 149-155 - David Mary Rajathei, Samuel Selvaraj:
Analysis of sequence repeats of proteins in the PDB. 156-166 - Elebeoba E. May, Andrei Leitão, Alexander Tropsha, Tudor I. Oprea:
A systems chemical biology study of malate synthase and isocitrate lyase inhibition in Mycobacterium tuberculosis during active and NRP growth. 167-180 - Vildan Enisoglu Atalay, Safiye Sag Erdem:
A comparative computational investigation on the proton and hydride transfer mechanisms of monoamine oxidase using model molecules. 181-191 - Chen Li, Weixing Shen, Sheng Shen, Zhilong Ai:
Gene expression patterns combined with bioinformatics analysis identify genes associated with cholangiocarcinoma. 192-197 - Yongqing Zhang, Yi-Fei Pu, Haisen Zhang, Yabo Su, Lifang Zhang, Jiliu Zhou:
Using gene expression programming to infer gene regulatory networks from time-series data. 198-206 - Zhenhua Li, Zhen-Xing Tang, Xiu-Juan Fang, Zhi-Liang Zhang, Lu-E. Shi:
Bioinformatics analysis of a non-specific nuclease from Yersinia enterocolitica subsp. palearctica. 207-214 - Jianzhao Gao, Ning Zhang, Jishou Ruan:
Prediction of protein modification sites of gamma-carboxylation using position specific scoring matrices based evolutionary information. 215-220 - Takuyo Aita, Norikazu Ichihashi, Tetsuya Yomo:
Probabilistic model based error correction in a set of various mutant sequences analyzed by next-generation sequencing. 221-230 - Suncica Z. Borozan, Srdan D. Stojanovic:
Halogen bonding in complexes of proteins and non-natural amino acids. 231-239 - Palak Sheth, Miguel Cervantes-Cervantes, Akhila Nagula, Christian Laing, Jason T. L. Wang:
Novel features for identifying A-minors in three-dimensional RNA molecules. 240-245 - Jacques M. Bahi, Christophe Guyeux, Kamel Mazouzi, Laurent Philippe:
Computational investigations of folded self-avoiding walks related to protein folding. 246-256
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