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ORCIDJournal of Bioinformatics and Computational Biology, Volume 19
Volume 19, Number 1, February 2021
- Ahmet Toprak
, Esma Eryilmaz:
Prediction of miRNA-disease associations based on Weighted K-Nearest known neighbors and network consistency projection. 2050041:1-2050041:16 - Zhijun Qiu, Qingjie Liu:
Protein-protein interaction site prediction using random forest proximity distance. 2050042:1-2050042:16 - T. V. Koshlan, K. G. Kulikov:
An innovative method for the selection of inhibitors of the viral spike-glycoprotein of the SARS-CoV. 2050043:1-2050043:17 - Md. Jahangir Alam, Md. Ripter Hossain, S. M. Shahinul Islam, Md. Nurul Haque Mollah:
Regression based fast multi-trait genome-wide QTL analysis. 2050044:1-2050044:23 - Hector Alejandro Pedrozo, Andrea M. Dallagnol, Carlos E. Schvezov:
Genetic algorithm applied to simultaneous parameter estimation in bacterial growth. 2050045:1-2050045:16 - Anjani Sankar Mantripragada, Sai Phani Teja, Rohith Reddy Katasani, Pratik Joshi, Masilamani V., Raj Ramesh:
Prediction of adverse drug reactions using drug convolutional neural networks. 2050046:1-2050046:23 - Chuan-Yuan Wang, Ying-Lian Gao, Jin-Xing Liu, Ling-Yun Dai, Junliang Shang:
Sparse robust graph-regularized non-negative matrix factorization based on correntropy. 2050047:1-2050047:24 - Tao Tang, Jinyan Li:
Transformation of FASTA files into feature vectors for unsupervised compression of short reads databases. 2050048:1-2050048:15
- Oliver Eulenstein, Qin Ding, Hisham Al-Mubaid:
Introduction to the JBCB Special Issue on Selected Papers from BICOB-2020. 2102001:1-2102001:2 - Fardina Fathmiul Alam, Amarda Shehu:
Unsupervised multi-instance learning for protein structure determination. 2140002:1-2140002:20 - Magali Champion, Julien Chiquet, Pierre Neuvial, Mohamed Elati, François Radvanyi, Etienne Birmelé:
Identification of deregulation mechanisms specific to cancer subtypes. 2140003:1-2140003:16
Volume 19, Number 2, April 2021
- Manu Rajan Nair:
Prophage loci predictor for bacterial genomes. 2050049:1-2050049:17 - Amish Kumar, Gitanjali Yadav:
Shared ancestry of core-histone subunits and non-histone plant proteins containing the Histone Fold Motif (HFM). 2140001:1-2140001:22 - Zhe Cheng, Lin Liu, Guoliang Li, Chao Yi, Xing Chu, Yu Liang, Wei Zhou, Xin Jin:
ReHiC: Enhancing Hi-C data resolution via residual convolutional network. 2150001:1-2150001:17 - Jamshid Pirgazi, Mohammad Hossein Olyaee, Ali Reza Khanteymoori:
KFGRNI: A robust method to inference gene regulatory network from time-course gene data based on ensemble Kalman filter. 2150002:1-2150002:22 - Siqi Xu, Li Wang, Xianchao Pan:
An evaluation of combined strategies for improving the performance of molecular docking. 2150003:1-2150003:13 - Yashpal Yadav, Sanjeev Narayan Sharma, Devendra Kumar Shakya, Abhishek Panchal:
Hot spots localization in proteins by optimized short time Ramanujan Fourier transform. 2150004:1-2150004:17 - Zeinab Zare Hosseini, Shekoufeh Kolahdouz Rahimi, Esmaeil Forouzan, Ahmad Baraani:
RMI-DBG algorithm: A more agile iterative de Bruijn graph algorithm in short read genome assembly. 2150005:1-2150005:22 - Fatemeh Nazem, Fahimeh Ghasemi, Afshin Fassihi, Alireza Mehri Dehnavi:
3D U-Net: A voxel-based method in binding site prediction of protein structure. 2150006:1-2150006:15
Volume 19, Number 3, June 2021
- Jure Praznikar:
Scaling laws of graphs of 3D protein structures. 2050050:1-2050050:15
- Fengfeng Zhou, Meiyu Duan:
Impacts of high-quality public data: Special issue on integrating public and in-house biomedical data. 2102002:1-2102002:2 - Junjie Lv, Fubin Ren, Zhengyu Lv, Zhiqiang Chang, Wan Li, Yuehan He, Lina Chen:
Identification of genes associated with cancer prognosis in glioma: In silico data analyses of Chinese Glioma Genome Atlas (CGGA) and The Cancer Genome Atlas (TCGA). 2140004:1-2140004:15 - Yuan Liu, Changhui Yan:
Impacts of reference selection on the assembly of suspicious coronavirus genome. 2140005:1-2140005:10
- H. Chatrabgoun, Ali-Reza Soltanian, Hossein Mahjub, F. Bahreini:
Learning gene regulatory networks using gaussian process emulator and graphical LASSO. 2150007:1-2150007:17 - Pietro Bongini, Simone Gardini, Monica Bianchini, Ottavia Spiga, Neri Niccolai:
Structural bioinformatics survey on disease-inducing missense mutations. 2150008:1-2150008:15 - Soheir Noori, Nabeel Al-A'Araji, Eman Al-Shamery:
Identifying protein complexes from protein-protein interaction networks based on the gene expression profile and core-attachment approach. 2150009:1-2150009:17 - Ana M. Jelovic:
RepeatsPlus - program for finding motifs and repeats in data sequences. 2150010:1-2150010:16
Volume 19, Number 4, August 2021
- Ray-Ming Chen:
Distance matrices for nitrogenous bases and amino acids of SARS-CoV-2 via structural metric. 2150011:1-2150011:14 - Lei Wang, Wei Kong, Shuaiqun Wang:
Detecting genetic associations with brain imaging phenotypes in Alzheimer's disease via a novel structured KCCA approach. 2150012:1-2150012:16 - Klairton Lima Brito, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
Reversals and transpositions distance with proportion restriction. 2150013:1-2150013:27 - Aparajita Dutta, Kusum Kumari Singh, Ashish Anand:
SpliceViNCI: Visualizing the splicing of non-canonical introns through recurrent neural networks. 2150014:1-2150014:24 - Wajid Arshad Abbasi, Syed Ali Abbas, Saiqa Andleeb:
PANDA: Predicting the change in proteins binding affinity upon mutations by finding a signal in primary structures. 2150015:1-2150015:19 - Zhong Chen, Bo Cao, Andrea Edwards, Hongwen Deng, Kun Zhang:
A deep imputation and inference framework for estimating personalized and race-specific causal effects of genomic alterations on PSA. 2150016:1-2150016:20 - Shiguo Deng, Qianshun Yuan, Jing Zhang, Huijie Yang:
Response of gene regulatory networks after infection of H3N2 virus. 2150017:1-2150017:24 - Omar Barukab, Farman Ali, Sher Afzal Khan:
DBP-GAPred: An intelligent method for prediction of DNA-binding proteins types by enhanced evolutionary profile features with ensemble learning. 2150018:1-2150018:18
Volume 19, Number 5, October 2021
- Shiqian He, Liang Kong, Jing Chen:
iDNA6mA-Rice-DL: A local web server for identifying DNA N6-methyladenine sites in rice genome by deep learning method. 2150019:1-2150019:13 - Tomás Gedeon, Lisa Davis, Katelyn Weber, Jennifer Thorenson:
Trade-offs among transcription elongation rate, number, and duration of ubiquitous pauses on highly transcribed bacterial genes. 2150020:1-2150020:29 - Adiba Yaseen, Sadaf Gull, Naeem Akhtar, Imran Amin, Fayyaz A. Minhas:
HemoNet: Predicting hemolytic activity of peptides with integrated feature learning. 2150021:1-2150021:20 - Shinq-Jen Wu:
Root locus-based stability analysis for biological systems. 2150023:1-2150023:29 - Mahshid Heidari, Mahboubeh Kabiri:
Prediction and validation of avascular tumor growth pattern in different metabolic conditions using in silico and in vitro models. 2150024:1-2150024:12 - L. S. Suma, S. S. Vinod Chandra:
Mining of structural motifs in proteins using artificial bee colony optimization framework for druggability. 2150025:1-2150025:20 - Winfield Chen, Lloyd T. Elliott:
Compression for population genetic data through finite-state entropy. 2150026:1-2150026:15 - Vitara Pungpapong:
Incorporating biological networks into high-dimensional Bayesian survival analysis using an ICM/M algorithm. 2150027:1-2150027:20 - Hrushikesh Bhosale, Vigneshwar Ramakrishnan, Valadi K. Jayaraman:
Support vector machine-based prediction of pore-forming toxins (PFT) using distributed representation of reduced alphabets. 2150028:1-2150028:15
Volume 19, Number 6, December 2021
- Rohan B. H. Williams, Louxin Zhang:
Introduction to the Special Issue of the 18th Annual International RECOMB Satellite Workshop on Comparative Genomics. 2102003:1-2102003:4 - Elena S. Gusareva, Paolo Alberto Lorenzini, Nurul Adilah Binte Ramli, Amit Gourav Ghosh, Hie Lim Kim:
Population-specific adaptation in malaria-endemic regions of asia. 2140006:1-2140006:14 - Meghan Chua, Anthony Tan, Olivier Tremblay Savard:
BOPAL 2.0 and a study of tRNA and rRNA gene evolution in Clostridium. 2140007:1-2140007:24 - Qiaoji Xu, Xiaomeng Zhang, Yue Zhang, Chunfang Zheng, James H. Leebens-Mack, Lingling Jin, David Sankoff:
The monoploid chromosome complement of reconstructed ancestral genomes in a phylogeny. 2140008:1-2140008:17 - Daniel Doerr, Cédric Chauve:
Small parsimony for natural genomes in the DCJ-indel model. 2140009:1-2140009:15 - Alitzel López Sánchez, Manuel Lafond:
Colorful orthology clustering in bounded-degree similarity graphs. 2140010:1-2140010:15 - Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
Incorporating intergenic regions into reversal and transposition distances with indels. 2140011:1-2140011:13 - Remie Janssen, Pengyu Liu:
Comparing the topology of phylogenetic network generators. 2140012:1-2140012:33 - Xiaoyue Cui, Maureen Stolzer, Dannie Durand:
Evidence for exon shuffling is sensitive to model choice. 2140013:1-2140013:17 - Diego P. Rubert, Daniel Doerr, Marília D. V. Braga:
The potential of family-free rearrangements towards gene orthology inference. 2140014:1-2140014:15 - Venta Terauds, Joshua Stevenson, Jeremy G. Sumner:
A symmetry-inclusive algebraic approach to genome rearrangement. 2140015:1-2140015:20 - Quentin Delorme, Rémy Costa, Yasmine Mansour, Anna-Sophie Fiston-Lavier, Annie Chateau:
Involving repetitive regions in scaffolding improvement. 2140016:1-2140016:15 - Firda Aminy Maruf, Rian Pratama, Giltae Song:
DNN-Boost: Somatic mutation identification of tumor-only whole-exome sequencing data using deep neural network and XGBoost. 2140017:1-2140017:16
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