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2020 – today
- 2023
[j14]Yuko Tsuchiya
, Tomoki Yonezawa, Yu Yamamori, Hiroko Inoura, Masanori Osawa, Kazuyoshi Ikeda, Kentaro Tomii:
PoSSuM v.3: A Major Expansion of the PoSSuM Database for Finding Similar Binding Sites of Proteins. J. Chem. Inf. Model. 63(23): 7578-7587 (2023)- 2020
- [j13]Hiroyuki Fukuda, Kentaro Tomii:
DeepECA: an end-to-end learning framework for protein contact prediction from a multiple sequence alignment. BMC Bioinform. 21(1): 10 (2020)
2010 – 2019
- 2019
- [j12]Masashi Tsubaki, Kentaro Tomii, Jun Sese:
Compound-protein interaction prediction with end-to-end learning of neural networks for graphs and sequences. Bioinform. 35(2): 309-318 (2019) - [r1]Kentaro Tomii:
Protein Properties. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 28-33 - 2018
- [j11]Tsukasa Nakamura, Kazunori D. Yamada, Kentaro Tomii, Kazutaka Katoh:
Parallelization of MAFFT for large-scale multiple sequence alignments. Bioinform. 34(14): 2490-2492 (2018) - 2017
- [j10]Toshiyuki Oda, Kyungtaek Lim, Kentaro Tomii:
Simple adjustment of the sequence weight algorithm remarkably enhances PSI-BLAST performance. BMC Bioinform. 18(1): 288 (2017) - 2016
- [j9]Kazunori D. Yamada, Kentaro Tomii, Kazutaka Katoh:
Application of the MAFFT sequence alignment program to large data - reexamination of the usefulness of chained guide trees. Bioinform. 32(21): 3246-3251 (2016) - 2015
- [j8]Jun-Ichi Ito, Kazuyoshi Ikeda, Kazunori D. Yamada, Kenji Mizuguchi, Kentaro Tomii:
PoSSuM v.2.0: data update and a new function for investigating ligand analogs and target proteins of small-molecule drugs. Nucleic Acids Res. 43(Database-Issue): 392-398 (2015) - [j7]Nozomi Nagano, Naoko Nakayama, Kazuyoshi Ikeda, Masaru Fukuie, Kiyonobu Yokota, Takuo Doi, Tsuyoshi Kato, Kentaro Tomii:
EzCatDB: the enzyme reaction database, 2015 update. Nucleic Acids Res. 43(Database-Issue): 453-458 (2015) - 2014
- [j6]Kazunori D. Yamada, Kentaro Tomii:
Revisiting amino acid substitution matrices for identifying distantly related proteins. Bioinform. 30(3): 317-325 (2014) - 2012
- [j5]Kentaro Tomii, Yoshito Sawada, Shinya Honda:
Convergent evolution in structural elements of proteins investigated using cross profile analysis. BMC Bioinform. 13: 11 (2012) - [j4]Jun-Ichi Ito, Yasuo Tabei, Kana Shimizu, Koji Tsuda, Kentaro Tomii:
PoSSuM: a database of similar protein-ligand binding and putative pockets. Nucleic Acids Res. 40(Database-Issue): 541-548 (2012) - 2011
- [j3]Chie Motono, Junichi Nakata, Ryotaro Koike, Kana Shimizu, Matsuyuki Shirota, Takayuki Amemiya, Kentaro Tomii, Nozomi Nagano, Naofumi Sakaya, Kiyotaka Misoo, Miwa Sato, Akinori Kidera, Hidekazu Hiroaki, Tsuyoshi Shirai, Kengo Kinoshita, Tamotsu Noguchi, Motonori Ota:
SAHG, a comprehensive database of predicted structures of all human proteins. Nucleic Acids Res. 39(Database-Issue): 487-493 (2011)
2000 – 2009
- 2007
- [j2]Kana Shimizu, Yoichi Muraoka, Shuichi Hirose, Kentaro Tomii, Tamotsu Noguchi:
Predicting mostly disordered proteins by using structure-unknown protein data. BMC Bioinform. 8 (2007) - 2004
- [j1]Kentaro Tomii, Yutaka Akiyama:
FORTE: a profile-profile comparison tool for protein fold recognition. Bioinform. 20(4): 594-595 (2004) - [c1]Tsuyoshi Kato, Koji Tsuda, Kentaro Tomii, Kiyoshi Asai:
A New Variational Framework for Rigid-Body Alignment. SSPR/SPR 2004: 171-179
1990 – 1999
- 1999
- [p1]Kentaro Tomii, Minoru Kanehisa:
Systematic Detection of Protein Structural Motifs. Pattern Discovery in Biomolecular Data 1999: 97-110
Coauthor Index
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