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Martijn P. van Iersel
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2010 – 2019
- 2016
- [j16]Nicolas Rodriguez
, Jean-Baptiste Pettit, Piero Dalle Pezze
, Lu Li, Arnaud Henry, Martijn P. van Iersel, Gaël Jalowicki, Martina Kutmon
, Kedar Nath Natarajan
, David Tolnay, Melanie I. Stefan
, Chris T. A. Evelo, Nicolas Le Novère:
The systems biology format converter. BMC Bioinform. 17: 154 (2016) - 2015
- [j15]Anwesha Bohler, Lars M. T. Eijssen, Martijn P. van Iersel, Christ Leemans
, Egon L. Willighagen
, Martina Kutmon
, Magali Jaillard, Chris T. A. Evelo:
Automatically visualise and analyse data on pathways using PathVisioRPC from any programming environment. BMC Bioinform. 16: 267:1-267:12 (2015) - [j14]Claudine Chaouiya
, Sarah M. Keating
, Duncan Bérenguier, Aurélien Naldi
, Denis Thieffry
, Martijn P. van Iersel, Nicolas Le Novère, Tomás Helikar
:
The Systems Biology Markup Language (SBML) Level 3 Package: Qualitative Models, Version 1, Release 1. J. Integr. Bioinform. 12(2) (2015) - [j13]Martina Kutmon
, Martijn P. van Iersel
, Anwesha Bohler, Thomas Kelder, Nuno Nunes, Alexander R. Pico
, Chris T. A. Evelo:
PathVisio 3: An Extendable Pathway Analysis Toolbox. PLoS Comput. Biol. 11(2) (2015) - 2014
- [j12]Martijn P. van Iersel
, Milka Sokolovic
, Kaatje Lenaerts
, Martina Kutmon
, Freek G. Bouwman, Wouter H. Lamers, Edwin C. M. Mariman, Chris T. A. Evelo:
Integrated Visualization of a Multi-omics Study of Starvation in Mouse Intestine. J. Integr. Bioinform. 11(1) (2014) - [i1]Jianjiong Gao
, Chao Zhang
, Martijn P. van Iersel
, Li Zhang, Dong Xu, Nikolaus Schultz
, Alexander R. Pico
:
BridgeDb app: unifying identifier mapping services for Cytoscape. F1000Research 3: 148 (2014) - 2013
- [j11]Jake Y. Fried, Martijn P. van Iersel
, Mirit I. Aladjem, Kurt W. Kohn, Augustin Luna:
PathVisio-Faceted Search: an exploration tool for multi-dimensional navigation of large pathways. Bioinform. 29(11): 1465-1466 (2013) - [j10]Emanuel J. V. Gonçalves
, Martijn P. van Iersel
, Julio Saez-Rodriguez
:
CySBGN: A Cytoscape plug-in to integrate SBGN maps. BMC Bioinform. 14: 17 (2013) - [j9]Finja Büchel
, Nicolas Rodriguez
, Neil Swainston, Clemens Wrzodek
, Tobias Czauderna
, Roland Keller, Florian Mittag
, Michael Schubert
, Mihai Glont
, Martin Golebiewski
, Martijn P. van Iersel
, Sarah M. Keating
, Matthias Rall, Michael Wybrow
, Henning Hermjakob
, Michael Hucka
, Douglas B. Kell
, Wolfgang Müller, Pedro Mendes
, Andreas Zell, Claudine Chaouiya
, Julio Saez-Rodriguez
, Falk Schreiber, Camille Laibe
, Andreas Dräger
, Nicolas Le Novère:
Path2Models: large-scale generation of computational models from biochemical pathway maps. BMC Syst. Biol. 7: 116 (2013) - [j8]Claudine Chaouiya
, Duncan Bérenguier, Sarah M. Keating
, Aurélien Naldi
, Martijn P. van Iersel
, Nicolas Rodriguez
, Andreas Dräger
, Finja Büchel
, Thomas Cokelaer
, Bryan M. Kowal, Benjamin Wicks, Emanuel J. V. Gonçalves
, Julien Dorier
, Michel Page, Pedro T. Monteiro
, Axel von Kamp, Ioannis Xenarios, Hidde de Jong
, Michael Hucka
, Steffen Klamt
, Denis Thieffry
, Nicolas Le Novère, Julio Saez-Rodriguez
, Tomás Helikar
:
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools. BMC Syst. Biol. 7: 135 (2013) - [c2]Martijn P. van Iersel, Nadia Anwar, Liz Reynolds:
Linked Data Services for Scientists Exemplified Using Drosophila Melanogaster Datasets. SWAT4LS 2013 - 2012
- [j7]Kumar Chandan, Martijn P. van Iersel
, Mirit I. Aladjem, Kurt W. Kohn, Augustin Luna:
PathVisio-Validator: a rule-based validation plugin for graphical pathway notations. Bioinform. 28(6): 889-890 (2012) - [j6]Martijn P. van Iersel
, Alice Villéger, Tobias Czauderna
, Sarah E. Boyd
, Frank T. Bergmann
, Augustin Luna, Emek Demir, Anatoly A. Sorokin
, Ugur Dogrusöz
, Yukiko Matsuoka, Akira Funahashi
, Mirit I. Aladjem, Huaiyu Mi, Stuart L. Moodie, Hiroaki Kitano, Nicolas Le Novère, Falk Schreiber:
Software support for SBGN maps: SBGN-ML and LibSBGN. Bioinform. 28(15): 2016-2021 (2012) - [j5]Camille Terfve
, Thomas Cokelaer
, David Henriques
, Aidan MacNamara
, Emanuel J. V. Gonçalves
, Melody K. Morris, Martijn P. van Iersel
, Douglas A. Lauffenburger, Julio Saez-Rodriguez
:
CellNOptR: a flexible toolkit to train protein signaling networks to data using multiple logic formalisms. BMC Syst. Biol. 6: 133 (2012) - [j4]Thomas Kelder, Martijn P. van Iersel
, Kristina Hanspers, Martina Kutmon
, Bruce R. Conklin
, Chris T. A. Evelo, Alexander R. Pico
:
WikiPathways: building research communities on biological pathways. Nucleic Acids Res. 40(Database-Issue): 1301-1307 (2012) - [c1]Martijn P. van Iersel, Julian A. T. Dow, Nadia Anwar:
Flexible Integration and Visualisation of Drosophila Melanogaster Datasets. SWAT4LS 2012 - 2011
- [j3]Augustin Luna, Margot Sunshine, Martijn P. van Iersel
, Mirit I. Aladjem, Kurt W. Kohn:
PathVisio-MIM: PathVisio plugin for creating and editing Molecular Interaction Maps (MIMs). Bioinform. 27(15): 2165-2166 (2011) - 2010
- [j2]Martijn P. van Iersel
, Alexander R. Pico
, Thomas Kelder, Jianjiong Gao
, Isaac Ho, Kristina Hanspers, Bruce R. Conklin
, Chris T. A. Evelo:
The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services. BMC Bioinform. 11: 5 (2010)
2000 – 2009
- 2008
- [j1]Martijn P. van Iersel
, Thomas Kelder, Alexander R. Pico
, Kristina Hanspers, Susan L. Coort
, Bruce R. Conklin
, Chris T. A. Evelo:
Presenting and exploring biological pathways with PathVisio. BMC Bioinform. 9 (2008)
Coauthor Index
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last updated on 2024-08-05 21:24 CEST by the dblp team
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