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2020 – today
- 2023
[j18]Pramod Chundury, Mehmet Adil Yalçin, Jonathan Crabtree, Anup Mahurkar, Lisa M. Shulman, Niklas Elmqvist
:
Contextual in situ help for visual data interfaces. Inf. Vis. 22(1): 69-84 (2023)- [j17]Seth A. Ament, Ricky S. Adkins, Robert Carter, Elena Chrysostomou, Carlo Colantuoni, Jonathan Crabtree, Heather Huot Creasy, Kylee Degatano, Victor Felix, Peter Gandt, Gwenn a Garden, Michelle G. Giglio, Brian R. Herb, Farzaneh Khajouei, Elizabeth Kiernan, Carrie McCracken, Kennedy McDaniel, Suvarna Nadendla, Lance Nickel, Dustin Olley, Joshua Orvis, Joseph P. Receveur, Mike Schor, Shreyash Sonthalia, Timothy L. Tickle, Jessica Way, Ronna Hertzano, Anup A. Mahurkar, Owen R. White:
The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 51(D1): 1075-1085 (2023) - 2021
- [j16]Heather Huot Creasy, Victor Felix, Jain Aluvathingal, Jonathan Crabtree, Olukemi O. Ifeonu, James Matsumura, Carrie McCracken, Lance Nickel, Joshua Orvis, Mike Schor, Michelle G. Giglio, Anup Mahurkar, Owen White:
HMPDACC: a Human Microbiome Project Multi-omic data resource. Nucleic Acids Res. 49(Database-Issue): D734-D742 (2021)
2010 – 2019
- 2014
- [j15]Jonathan Crabtree, Sonia Agrawal, Anup Mahurkar, Garry S. A. Myers, David A. Rasko, Owen White:
Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG. Bioinform. 30(21): 3125-3127 (2014) - 2013
- [i3]Jonathan Crabtree:
DataBridge: Building an E-science Collaboration Environment Tool for Linking Diverse Datasets into a Socio-metric Network. IASSIST Conference 2013 - [i2]Jonathan Crabtree, Lynda Kellam:
Expansion of the Odum Institute Dataverse Network: Forming Partnerships, Harnessing Infrastructures, and increasing Preservation of Research Data. IASSIST Conference 2013 - 2012
- [j14]David R. Riley, Samuel V. Angiuoli, Jonathan Crabtree, Julie C. Dunning Hotopp, Hervé Tettelin:
Using Sybil for interactive comparative genomics of microbes on the web. Bioinform. 28(2): 160-166 (2012) - [j13]Martha B. Arnaud, Gustavo C. Cerqueira, Diane O. Inglis, Marek S. Skrzypek, Jonathan Binkley, Marcus C. Chibucos, Jonathan Crabtree, Clinton Howarth, Joshua Orvis, Prachi Shah, Farrell Wymore, Gail Binkley, Stuart R. Miyasato, Matt Simison, Gavin Sherlock, Jennifer R. Wortman:
The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources. Nucleic Acids Res. 40(Database-Issue): 653-659 (2012) - 2011
- [c7]Jonathan Crabtree:
Virtual Archiving for Public Opinion Polls. iPRES 2011 - 2010
- [j12]Joshua Orvis, Jonathan Crabtree, Kevin Galens, Aaron Gussman, Jason M. Inman, Eduardo Lee, Sreenath Nampally, David R. Riley, Jaideep P. Sundaram, Victor Felix, Brett Whitty, Anup Mahurkar, Jennifer R. Wortman, Owen White, Samuel V. Angiuoli:
Ergatis: a web interface and scalable software system for bioinformatics workflows. Bioinform. 26(12): 1488-1492 (2010) - [j11]Lauren M. Brinkac, Tanja Davidsen, Erin Beck, Anuradha Ganapathy, Elisabet Caler, Robert J. Dodson, A. Scott Durkin, Derek M. Harkins, Hernan Lorenzi, Ramana Madupu, Yinong Sebastian, Susmita Shrivastava, Mathangi Thiagarajan, Joshua Orvis, Jaideep P. Sundaram, Jonathan Crabtree, Kevin Galens, Yongmei Zhao, Jason M. Inman, Robert Montgomery, Seth A. Schobel, Kevin Galinsky, David M. Tanenbaum, Adam Resnick, Nikhat Zafar, Owen White, Granger G. Sutton:
Pathema: a clade-specific bioinformatics resource center for pathogen research. Nucleic Acids Res. 38(Database-Issue): 408-414 (2010) - [j10]Martha B. Arnaud, Marcus C. Chibucos, Maria C. Costanzo, Jonathan Crabtree, Diane O. Inglis, Adil Lotia, Joshua Orvis, Prachi Shah, Marek S. Skrzypek, Gail Binkley, Stuart R. Miyasato, Jennifer R. Wortman, Gavin Sherlock:
The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community. Nucleic Acids Res. 38(Database-Issue): 420-427 (2010) - [i1]Jonathan Crabtree, Antoine de Torcy, Mason Chua:
Automated DDI Metadata Harvesting and Replication for Preservation Purposes within iRODS. IASSIST 2010
2000 – 2009
- 2009
- [j9]Nelson Axelrod, Yuan Lin, Pauline C. Ng, Timothy B. Stockwell, Jonathan Crabtree, Jiaqi Huang, Ewen Kirkness, Robert Strausberg, Marvin Frazier, J. Craig Venter, Saul Kravitz, Samuel Levy:
The HuRef Browser: a web resource for individual human genomics. Nucleic Acids Res. 37(Database-Issue): 1018-1024 (2009) - [c6]Jewel H. Ward, Antoine de Torcy, Mason Chua, Jonathan Crabtree:
Extracting and Ingesting DDI Metadata and Digital Objects from a Data Archive into the iRODS Extension of the NARA TPAP Using the OAI-PMH. eScience 2009: 185-192 - 2008
- [j8]Amy Egan, Anup Mahurkar, Jonathan Crabtree, Jonathan H. Badger, Jane M. Carlton, Joana C. Silva:
IDEA: Interactive Display for Evolutionary Analyses. BMC Bioinform. 9 (2008) - [c5]Jewel H. Ward, Jonathan Crabtree:
Integrating ddi metadata into the nara transcontinental persistent archive prototype via the oai-pmh. JCDL 2008: 473 - 2004
- [j7]Li Li, Jonathan Crabtree, Steve Fischer, Deborah F. Pinney, Christian J. Stoeckert Jr., L. David Sibley, David S. Roos:
ApiEST-DB: analyzing clustered EST data of the apicomplexan parasites. Nucleic Acids Res. 32(Database-Issue): 326-328 (2004) - 2003
- [j6]Amit Bahl, Brian P. Brunk, Jonathan Crabtree, Martin J. Fraunholz, Bindu Gajria, Gregory R. Grant, Hagai Ginsburg, Dinesh Gupta, Jessica C. Kissinger, Philip Labo, Li Li, Matthew D. Mailman, Arthur J. Milgram, David S. Pearson, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr., Patricia L. Whetzel:
PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data. Nucleic Acids Res. 31(1): 212-215 (2003) - 2002
- [j5]Amit Bahl, Brian P. Brunk, Ross L. Coppel, Jonathan Crabtree, Sharon J. Diskin, Martin J. Fraunholz, Gregory R. Grant, Dinesh Gupta, Robert L. Huestis, Jessica C. Kissinger, Philip Labo, Li Li, Shannon K. McWeeney, Arthur J. Milgram, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr.:
PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished). Nucleic Acids Res. 30(1): 87-90 (2002) - 2001
- [j4]Christian J. Stoeckert Jr., Angel D. Pizarro, Elisabetta Manduchi, M. Gibson, Brian P. Brunk, Jonathan Crabtree, Jonathan Schug, Shai Shen-Orr, G. Christian Overton:
A relational schema for both array-based and SAGE gene expression experiments. Bioinform. 17(4): 300-308 (2001) - [j3]Susan B. Davidson, Jonathan Crabtree, Brian P. Brunk, Jonathan Schug, Val Tannen, G. Christian Overton, Christian J. Stoeckert Jr.:
K2/Kleisli and GUS: Experiments in integrated access to genomic data sources. IBM Syst. J. 40(2): 512-531 (2001)
1990 – 1999
- 1999
- [j2]Steve Fischer, Jonathan Crabtree, Brian P. Brunk, M. Gibson, G. Christian Overton:
bioWidgets: data interaction components for genomics. Bioinform. 15(10): 837-846 (1999) - 1995
- [j1]John P. Granieri, Jonathan Crabtree, Norman I. Badler:
Production and Playback of Human Figure Motion for Visual Simulation. ACM Trans. Model. Comput. Simul. 5(3): 222-241 (1995) - [c4]John P. Granieri, Welton Becket, Barry D. Reich, Jonathan Crabtree, Norman I. Badler:
Behavioral Control for Real-Time Simulated Human Agents. SI3D 1995: 173-180 - [c3]John P. Granieri, Jonathan Crabtree, Norman I. Badler:
Production and playback of human figure motion for 3D virtual environments. VRAIS 1995: 127-135 - 1993
- [c2]Kim B. Bruce, Jonathan Crabtree, Gerlad Kanapathy:
An Operational Semantics for TOOPLE: A Statically-Typed Object-Oriented Programming Language. MFPS 1993: 603-626 - [c1]Kim B. Bruce, Jonathan Crabtree, Thomas P. Murtagh, Robert van Gent, Allyn Dimock, Robert Muller:
Safe and Decidable Type Checking in an Object-Oriented Language. OOPSLA 1993: 29-46
Coauthor Index
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