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ORCIDDavid L. Robertson
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2020 – today
- 2024
[j27]Raquel Lopes Costa, Luiz M. R. Gadelha Jr.
, Mirela D'arc, Marcelo Ribeiro-Alves, David L. Robertson, Jean-Marc Schwartz, Marcelo A. Soares, Fábio Porto:
HIHISIV: a database of gene expression in HIV and SIV host immune response. BMC Bioinform. 25(1): 125 (2024)- [j26]Kieran D. Lamb, Martha M. Luka, Megan Saathoff, Richard J. Orton, My V. T. Phan, Matthew Cotten, Ke Yuan, David L. Robertson:
Mutational signature dynamics indicate SARS-CoV-2's evolutionary capacity is driven by host antiviral molecules. PLoS Comput. Biol. 20(1) (2024) - [j25]Dan Liu, Francesca Young, Kieran D. Lamb, David L. Robertson, Ke Yuan:
Prediction of virus-host associations using protein language models and multiple instance learning. PLoS Comput. Biol. 20(11): 1012597 (2024) - 2022
- [j24]Haiting Chai, Quan Gu, Joseph Hughes, David L. Robertson:
In silico prediction of HIV-1-host molecular interactions and their directionality. PLoS Comput. Biol. 18(2) (2022) - 2021
- [j23]Franziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida, Abdel Aouacheria, Cecilia N. Arighi, Alex Bateman, Jan Baumbach, Niko Beerenwinkel, Christian Brandt, Marco Cacciabue, Sara Chuguransky, Oliver Drechsel, Robert D. Finn, Adrian Fritz, Stephan Fuchs, Georges Hattab, Anne-Christin Hauschild, Dominik Heider, Marie Hoffmann, Martin Hölzer, Stefan Hoops, Lars Kaderali, Ioanna Kalvari, Max von Kleist, Renó Kmiecinski, Denise Kühnert, Gorka Lasso, Pieter Libin, Markus List, Hannah F. Löchel, Maria Jesus Martin, Roman Martin, Julian O. Matschinske, Alice C. McHardy, Pedro Mendes, Jaina Mistry, Vincent Navratil, Eric P. Nawrocki, Áine Niamh O'toole, Nancy Ontiveros-Palacios, Anton I. Petrov, Guillermo Rangel-Pineros, Nicole Redaschi, Susanne Reimering, Knut Reinert, Alejandro Reyes, Lorna J. Richardson, David L. Robertson, Sepideh Sadegh, Joshua B. Singer, Kristof Theys, Chris Upton, Marius Welzel, Lowri Williams, Manja Marz:
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research. Briefings Bioinform. 22(2): 642-663 (2021) - 2020
- [j22]Francesca Young, Simon Rogers, David L. Robertson:
Predicting host taxonomic information from viral genomes: A comparison of feature representations. PLoS Comput. Biol. 16(5) (2020)
2010 – 2019
- 2018
- [j21]Ruth Alexandra Stoney, Jean-Marc Schwartz, David L. Robertson, Goran Nenadic:
Using set theory to reduce redundancy in pathway sets. BMC Bioinform. 19(1): 386:1-386:11 (2018) - 2017
- [j20]Michail Tsimpidis, Georgios Bachoumis, Kalliopi Mimouli, Zaharoula Kyriakopoulou, David L. Robertson, Panayotis Markoulatos, Grigoris D. Amoutzias:
T-RECs: rapid and large-scale detection of recombination events among different evolutionary lineages of viral genomes. BMC Bioinform. 18(1): 13:1-13:8 (2017) - [j19]Bede Constantinides, David L. Robertson:
Kindel: indel-aware consensus for nucleotide sequence alignments. J. Open Source Softw. 2(15): 282 (2017) - [c4]Samaneh Kouchaki, Santosh Tirunagari, Avraam Tapinos, David L. Robertson:
Marginalised stack denoising autoencoders for metagenomic data binning. CIBCB 2017: 1-6 - [c3]Avraam Tapinos, David L. Robertson:
De novo assembly of nucleotide sequences in a compressed feature space. CIBCB 2017: 1-7 - 2016
- [c2]Samaneh Kouchaki, Santosh Tirunagari, Avraam Tapinos, David L. Robertson:
Local binary patterns as a feature descriptor in alignment-free visualisation of metagenomic data. SSCI 2016: 1-6 - 2015
- [j18]Oyebode J. Oyeyemi, Oluwafemi Davies, David L. Robertson, Jean-Marc Schwartz:
A logical model of HIV-1 interactions with the T-cell activation signalling pathway. Bioinform. 31(7): 1075-1083 (2015) - [j17]Geraint Duck, Aleksandar Kovacevic, David L. Robertson, Robert Stevens, Goran Nenadic:
Ambiguity and variability of database and software names in bioinformatics. J. Biomed. Semant. 6: 29 (2015) - 2014
- [j16]Geraint Duck, Goran Nenadic, Andy Brass, David L. Robertson, Robert Stevens:
Extracting patterns of database and software usage from the bioinformatics literature. Bioinform. 30(17): 601-608 (2014) - 2013
- [j15]Daniel G. Jamieson, Phoebe M. Roberts, David L. Robertson, Ben Sidders, Goran Nenadic:
Cataloging the biomedical world of pain through semi-automated curation of molecular interactions. Database J. Biol. Databases Curation 2013 (2013) - [j14]Geraint Duck, Goran Nenadic, Andy Brass, David L. Robertson, Robert Stevens:
bioNerDS: exploring bioinformatics' database and software use through literature mining. BMC Bioinform. 14: 194 (2013) - 2012
- [j13]Daniel G. Jamieson, Martin Gerner, Farzaneh Sarafraz, Goran Nenadic, David L. Robertson:
Towards semi-automated curation: using text mining to recreate the HIV-1, human protein interaction database. Database J. Biol. Databases Curation 2012 (2012) - [j12]John P. Archer, Greg Baillie, Simon J. Watson, Paul Kellam, Andrew Rambaut, David L. Robertson:
Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II. BMC Bioinform. 13: 47 (2012) - 2010
- [j11]Jonathan E. Dickerson, John W. Pinney, David L. Robertson:
The biological context of HIV-1 host interactions reveals subtle insights into a system hijack. BMC Syst. Biol. 4: 80 (2010) - [j10]Jamie I. MacPherson, Jonathan E. Dickerson, John W. Pinney, David L. Robertson:
Patterns of HIV-1 Protein Interaction Identify Perturbed Host-Cellular Subsystems. PLoS Comput. Biol. 6(7) (2010) - [j9]John P. Archer, Andrew Rambaut, Bruce E. Taillon, P. Richard Harrigan, Marilyn Lewis, David L. Robertson:
The Evolutionary Analysis of Emerging Low Frequency HIV-1 CXCR4 Using Variants through Time - An Ultra-Deep Approach. PLoS Comput. Biol. 6(12) (2010)
2000 – 2009
- 2009
- [j8]Jamie I. MacPherson, John W. Pinney, David L. Robertson:
JNets: Exploring networks by integrating annotation. BMC Bioinform. 10 (2009) - 2008
- [j7]James M. Eales, John W. Pinney, Robert D. Stevens, David L. Robertson:
Methodology capture: discriminating between the "best" and the rest of community practice. BMC Bioinform. 9 (2008) - [j6]John P. Archer, John W. Pinney, Jun Fan, Etienne Simon-Loriere, Eric J. Arts, Matteo Negroni, David L. Robertson:
Identifying the Important HIV-1 Recombination Breakpoints. PLoS Comput. Biol. 4(9) (2008) - 2007
- [j5]John P. Archer, David L. Robertson:
CTree: comparison of clusters between phylogenetic trees made easy. Bioinform. 23(21): 2952-2953 (2007) - [j4]Brian J. Holden, John W. Pinney, Simon C. Lovell, Grigoris D. Amoutzias, David L. Robertson:
An exploration of alternative visualisations of the basic helix-loop-helix protein interaction network. BMC Bioinform. 8 (2007) - [j3]Grigoris D. Amoutzias, Elgar Pichler, Nina Mian, David De Graaf, Anastasia Imsiridou, Marc Robinson-Rechavi, Erich Bornberg-Bauer, David L. Robertson, Stephen G. Oliver:
A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network. BMC Syst. Biol. 1: 34 (2007) - [j2]John W. Pinney, John M. Starkovich, Peter Li, David L. Robertson:
SHARKview: a tool for the visualization of systems biology data. BMC Syst. Biol. 1(S-1): P33 (2007) - [j1]Luke Hakes, Simon C. Lovell, Stephen G. Oliver, David L. Robertson:
Similarity in expression accounts for correlated evolution of interacting proteins. BMC Syst. Biol. 1(S-1): P59 (2007) - 2000
- [c1]Alia BenKahla, David L. Robertson, Emmanuel Beaudoing, Jean-Michel Claverie:
The Detection of Putative Recombinant Sequences Using BLAST. German Conference on Bioinformatics 2000: 3-10
Coauthor Index
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