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2020 – today
- 2024
[j18]Jimyung Park
, Yilu Fang, Casey N. Ta, Gongbo Zhang, Betina Idnay, Fangyi Chen, David Feng, Rebecca Shyu, Emily R. Gordon, Matthew E. Spotnitz, Chunhua Weng:
Criteria2Query 3.0: Leveraging generative large language models for clinical trial eligibility query generation. J. Biomed. Informatics 154: 104649 (2024)- [j17]Kayla Schiffer-Kane, Cong Liu, Tiffany J. Callahan, Casey N. Ta, Jordan G. Nestor, Chunhua Weng:
Converting OMOP CDM to phenopackets: A model alignment and patient data representation evaluation. J. Biomed. Informatics 155: 104659 (2024) - 2023
- [j16]Casey N. Ta, Jason E. Zucker, Po-Hsiang Chiu, Yilu Fang, Karthik Natarajan, Chunhua Weng:
Clinical and temporal characterization of COVID-19 subgroups using patient vector embeddings of electronic health records. J. Am. Medical Informatics Assoc. 30(2): 256-272 (2023) - [j15]Tian Kang, Yingcheng Sun, Jae Hyun Kim, Casey N. Ta, Adler J. Perotte, Kayla Schiffer, Mutong Wu, Yang Zhao, Nour Moustafa-Fahmy, Yifan Peng, Chunhua Weng:
EvidenceMap: a three-level knowledge representation for medical evidence computation and comprehension. J. Am. Medical Informatics Assoc. 30(6): 1022-1031 (2023) - [j14]Yilu Fang, Hao Liu, Betina Ross S. Idnay, Casey N. Ta, Karen Marder, Chunhua Weng:
A data-driven approach to optimizing clinical study eligibility criteria. J. Biomed. Informatics 142: 104375 (2023) - 2022
- [j13]James R. Rogers, Jovana Pavisic, Casey N. Ta, Cong Liu, Ali Soroush, Ying Kuen Cheung, George Hripcsak, Chunhua Weng:
Leveraging electronic health record data for clinical trial planning by assessing eligibility criteria's impact on patient count and safety. J. Biomed. Informatics 127: 104032 (2022) - 2021
- [j12]Yingcheng Sun, Alex M. Butler, Ibrahim Diallo, Jae Hyun Kim, Casey N. Ta, James R. Rogers, Hao Liu, Chunhua Weng:
A Framework for Systematic Assessment of Clinical Trial Population Representativeness Using Electronic Health Records Data. Appl. Clin. Inform. 12(4): 816-825 (2021) - [j11]Jae Hyun Kim, Alex M. Butler, Casey N. Ta, Yingcheng Sun, Mathew S. Maurer, Chunhua Weng:
The potential role of EHR data in optimizing eligibility criteria definition for cardiovascular outcome trials. Int. J. Medical Informatics 156: 104587 (2021) - [j10]Jae Hyun Kim, Casey N. Ta, Cong Liu, Cynthia Sung, Alex M. Butler, Latoya A. Stewart, Lyudmila Ena, James R. Rogers, Junghwan Lee, Anna Ostropolets, Patrick B. Ryan, Hao Liu, Shing M. Lee, Mitchell S. V. Elkind, Chunhua Weng:
Towards clinical data-driven eligibility criteria optimization for interventional COVID-19 clinical trials. J. Am. Medical Informatics Assoc. 28(1): 14-22 (2021) - [j9]Tian Kang, Adler J. Perotte, Youlan Tang, Casey N. Ta, Chunhua Weng:
UMLS-based data augmentation for natural language processing of clinical research literature. J. Am. Medical Informatics Assoc. 28(4): 812-823 (2021) - [j8]Chi Yuan, Patrick B. Ryan, Casey N. Ta, Jae Hyun Kim, Ziran Li, Chunhua Weng:
From clinical trials to clinical practice: How long are drugs tested and then used by patients? J. Am. Medical Informatics Assoc. 28(11): 2456-2460 (2021) - [c4]Cong Liu, Hao Liu, Casey N. Ta, James Roger, Alex Butler, Junghwan Lee, Jaehyun Kim, Ning Shang, Chunhua Weng:
Evaluation of Criteria2Query: Towards Augmented Intelligence for Cohort Identification. MedInfo 2021: 297-300 - [c3]Junghwan Lee, Cong Liu, Casey N. Ta, Chunhua Weng:
Towards Better Diagnosis Prediction Using Bidirectional Recurrent Neural Networks. MedInfo 2021: 1054-1055
2010 – 2019
- 2019
- [j7]Chi Yuan, Patrick B. Ryan, Casey N. Ta, Yixuan Guo, Ziran Li, Jill Hardin, Rupa Makadia, Peng Jin, Ning Shang, Tian Kang, Chunhua Weng:
Criteria2Query: a natural language interface to clinical databases for cohort definition. J. Am. Medical Informatics Assoc. 26(4): 294-305 (2019) - [j6]Cong Liu, Chi Yuan, Alex M. Butler, Richard D. Carvajal, Ziran Ryan Li, Casey N. Ta, Chunhua Weng:
DQueST: dynamic questionnaire for search of clinical trials. J. Am. Medical Informatics Assoc. 26(11): 1333-1343 (2019) - [j5]Ning Shang, Cong Liu, Luke V. Rasmussen, Casey N. Ta, Robert J. Carroll, Barbara Benoit, Todd Lingren, Ozan Dikilitas, Frank D. Mentch, David S. Carrell, Wei-Qi Wei, Yuan Luo, Vivian S. Gainer, Iftikhar J. Kullo, Jennifer A. Pacheco, Hakon Hakonarson, Theresa L. Walunas, Joshua C. Denny, Chunhua Weng:
Making work visible for electronic phenotype implementation: Lessons learned from the eMERGE network. J. Biomed. Informatics 99 (2019) - [j4]Karamarie Fecho, Stanley C. Ahalt, Saravanan Arunachalam, James Champion, Christopher G. Chute, Sarah Davis, Kenneth Gersing, Gustavo Glusman, Jennifer Hadlock, Jewel Lee, Emily R. Pfaff, Max Robinson, Eric Sid, Casey N. Ta, Hao Xu, Richard L. Zhu, Qian Zhu, David B. Peden:
Sex, obesity, diabetes, and exposure to particulate matter among patients with severe asthma: Scientific insights from a comparative analysis of open clinical data sources during a five-day hackathon. J. Biomed. Informatics 100 (2019) - [j3]Cong Liu, Casey N. Ta, James R. Rogers, Ziran Li, Junghwan Lee, Alex M. Butler, Ning Shang, Fabricio Sampaio Peres Kury, Liwei Wang, Feichen Shen, Hongfang Liu, Lyudmila Ena, Carol Friedman, Chunhua Weng:
Ensembles of natural language processing systems for portable phenotyping solutions. J. Biomed. Informatics 100 (2019) - [j2]Cong Liu, Fabricio Sampaio Peres Kury, Ziran Li, Casey N. Ta, Kai Wang, Chunhua Weng:
Doc2Hpo: a web application for efficient and accurate HPO concept curation. Nucleic Acids Res. 47(Webserver-Issue): W566-W570 (2019) - [c2]Duo Helen Wei, Casey N. Ta, Harold Alan Pincus, Chunhua Weng:
Combining Clinical Data and Domain Knowledge for Analyzing Mental Disorder Concept Relatedness and Usage. ICHI 2019: 1-6 - [c1]Casey N. Ta, Chunhua Weng:
Detecting Systemic Data Quality Issues in Electronic Health Records. MedInfo 2019: 383-387 - 2018
- [j1]James Wang, Christopher V. Barback, Casey N. Ta, Joi Weeks, Natalie Gude, Robert F. Mattrey, Sarah L. Blair, William C. Trogler, Hotaik Lee, Andrew C. Kummel:
Extended Lifetime In Vivo Pulse Stimulated Ultrasound Imaging. IEEE Trans. Medical Imaging 37(1): 222-229 (2018)
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