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ORCIDAleksandra M. Walczak
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- affiliation: École Normale Supérieure, Paris, France
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2020 – today
- 2023
[i4]Francesco Camaglia, Ilya Nemenman, Thierry Mora, Aleksandra M. Walczak:
Bayesian estimation of the Kullback-Leibler divergence for categorical sytems using mixtures of Dirichlet priors. CoRR abs/2307.04201 (2023)- 2022
- [j21]Kamesh Krishnamurthy, Ann M. Hermundstad, Thierry Mora, Aleksandra M. Walczak, Vijay Balasubramanian:
Disorder and the Neural Representation of Complex Odors. Frontiers Comput. Neurosci. 16 (2022) - [j20]Cosimo Lupo
, Natanael Spisak, Aleksandra M. Walczak, Thierry Mora:
Learning the statistics and landscape of somatic mutation-induced insertions and deletions in antibodies. PLoS Comput. Biol. 18(6) (2022) - 2021
- [j19]Vedant Sachdeva, Thierry Mora, Aleksandra M. Walczak, Stephanie E. Palmer:
Optimal prediction with resource constraints using the information bottleneck. PLoS Comput. Biol. 17(3) (2021) - [j18]Barbara Bravi, Vinod P. Balachandran, Benjamin D. Greenbaum, Aleksandra M. Walczak, Thierry Mora, Rémi Monasson, Simona Cocco:
Probing T-cell response by sequence-based probabilistic modeling. PLoS Comput. Biol. 17(9) (2021) - [i3]Federica Ferretti, Victor Chardès, Thierry Mora, Aleksandra M. Walczak, Irene Giardina:
The Connection between Discrete- and Continuous-Time Descriptions of Gaussian Continuous Processes. CoRR abs/2101.06482 (2021) - [i2]Giulio Isacchini, Natanael Spisak, Armita Nourmohammad, Thierry Mora, Aleksandra M. Walczak:
MINIMALIST: Mutual INformatIon Maximization for Amortized Likelihood Inference from Sampled Trajectories. CoRR abs/2106.01808 (2021) - 2020
- [j17]Giulio Isacchini, Carlos Olivares, Armita Nourmohammad, Aleksandra M. Walczak, Thierry Mora:
SOS: online probability estimation and generation of T-and B-cell receptors. Bioinform. 36(16): 4510-4512 (2020) - [j16]Maximilian Puelma Touzel, Aleksandra M. Walczak, Thierry Mora:
Inferring the immune response from repertoire sequencing. PLoS Comput. Biol. 16(4) (2020) - [j15]Zachary Sethna, Giulio Isacchini, Thomas Dupic, Thierry Mora, Aleksandra M. Walczak, Yuval Elhanati:
Population variability in the generation and selection of T-cell repertoires. PLoS Comput. Biol. 16(12) (2020)
2010 – 2019
- 2019
- [j14]Zachary Sethna, Yuval Elhanati, Jr Curtis G. Callan, Aleksandra M. Walczak, Thierry Mora:
OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs. Bioinform. 35(17): 2974-2981 (2019) - [j13]Paulina Szymanska-Rozek, Dario Villamaina, Jacek Miekisz, Aleksandra M. Walczak:
Dissipation in Non-Steady State Regulatory Circuits. Entropy 21(12): 1212 (2019) - [j12]Thomas Dupic, Quentin Marcou, Aleksandra M. Walczak, Thierry Mora:
Genesis of the αβ T-cell receptor. PLoS Comput. Biol. 15(3) (2019) - [j11]Jacopo Marchi, Ezequiel A. Galpern, Rocío Espada, Diego U. Ferreiro, Aleksandra M. Walczak, Thierry Mora:
Size and structure of the sequence space of repeat proteins. PLoS Comput. Biol. 15(8) (2019) - 2018
- [j10]Huy Tran, Jonathan Desponds, Carmina Perez Romero, Mathieu Coppey, Cecile Fradin, Nathalie Dostatni, Aleksandra M. Walczak:
Precision in a rush: Trade-offs between reproducibility and steepness of the hunchback expression pattern. PLoS Comput. Biol. 14(10) (2018) - [j9]Nicholas A. Rossi, Thierry Mora, Aleksandra M. Walczak, Mary J. Dunlop:
Active degradation of MarA controls coordination of its downstream targets. PLoS Comput. Biol. 14(12) (2018) - 2017
- [j8]Charles K. Fisher, Thierry Mora, Aleksandra M. Walczak:
Variable habitat conditions drive species covariation in the human microbiota. PLoS Comput. Biol. 13(4) (2017) - [j7]Rocío Espada, R. Gonzalo Parra, Thierry Mora, Aleksandra M. Walczak, Diego U. Ferreiro:
Inferring repeat-protein energetics from evolutionary information. PLoS Comput. Biol. 13(6) (2017) - [j6]Mikhail V. Pogorelyy, Yuval Elhanati, Quentin Marcou, Anastasiia L. Sycheva, Ekaterina Komech, Vadim I. Nazarov, Olga V. Britanova, Dmitry M. Chudakov, Ilgar Z. Mamedov, Yuri B. Lebedev, Thierry Mora, Aleksandra M. Walczak:
Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires. PLoS Comput. Biol. 13(7) (2017) - 2016
- [j5]Yuval Elhanati, Quentin Marcou, Thierry Mora, Aleksandra M. Walczak:
repgenHMM: a dynamic programming tool to infer the rules of immune receptor generation from sequence data. Bioinform. 32(13): 1943-1951 (2016) - [j4]Andrew Mugler, Mark Kittisopikul, Luke Hayden, Jintao Liu, Chris H. Wiggins, Gürol M. Süel, Aleksandra M. Walczak:
Noise Expands the Response Range of the Bacillus subtilis Competence Circuit. PLoS Comput. Biol. 12(3) (2016) - [j3]Jonathan Desponds, Huy Tran, Teresa Ferraro, Tanguy Lucas, Carmina Perez Romero, Aurelien Guillou, Cecile Fradin, Mathieu Coppey, Nathalie Dostatni, Aleksandra M. Walczak:
Precision of Readout at the hunchback Gene: Analyzing Short Transcription Time Traces in Living Fly Embryos. PLoS Comput. Biol. 12(12) (2016) - 2015
- [j2]Rocío Espada, R. Gonzalo Parra, Thierry Mora, Aleksandra M. Walczak, Diego U. Ferreiro:
Capturing coevolutionary signals inrepeat proteins. BMC Bioinform. 16: 207:1-207:10 (2015) - 2014
- [i1]Andrea Cavagna, Lorenzo Del Castello, Irene Giardina, Tomas Grigera, Asja Jelic, Stefania Melillo, Thierry Mora, Leonardo Parisi, Edmondo Silvestri, Massimiliano Viale, Aleksandra M. Walczak:
Flocking and turning: a new model for self-organized collective motion. CoRR abs/1403.1202 (2014)
2000 – 2009
- 2008
- [j1]Diego U. Ferreiro, Aleksandra M. Walczak, Elizabeth A. Komives, Peter G. Wolynes:
The Energy Landscapes of Repeat-Containing Proteins: Topology, Cooperativity, and the Folding Funnels of One-Dimensional Architectures. PLoS Comput. Biol. 4(5) (2008)
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