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2020 – today
- 2024
[j10]Jacqueline Honerlaw
, Yuk-Lam Ho, Francesca Fontin, Michael Murray, Ashley Galloway, David Heise, Keith Connatser, Laura Davies, Jeffrey Gosian, Monika Maripuri, John Russo, Rahul Sangar, Vidisha Tanukonda, Edward Zielinski, Maureen Dubreuil, Andrew J. Zimolzak, Vidul Ayakulangara Panickan, Su-Chun Cheng, Stacey B. Whitbourne, David R. Gagnon, Tianxi Cai, Katherine P. Liao, Rachel B. Ramoni, J. Michael Gaziano, Sumitra Muralidhar, Kelly Cho:
Centralized Interactive Phenomics Resource: an integrated online phenomics knowledgebase for health data users. J. Am. Medical Informatics Assoc. 31(5): 1126-1134 (2024)- [j9]Jun Wen, Jue Hou, Clara-Lea Bonzel, Yihan Zhao, Victor M. Castro, Vivian S. Gainer, Dana Weisenfeld, Tianrun Cai, Yuk-Lam Ho, Vidul Ayakulangara Panickan, Lauren Costa, Chuan Hong, J. Michael Gaziano, Katherine P. Liao, Junwei Lu, Kelly Cho, Tianxi Cai:
LATTE: Label-efficient incident phenotyping from longitudinal electronic health records. Patterns 5(1): 100906 (2024) - 2023
- [j8]Jun Wen, Xiang Zhang, Everett Neil Rush, Vidul Ayakulangara Panickan, Xingyu Li, Tianrun Cai, Doudou Zhou, Yuk-Lam Ho, Lauren Costa, Edmon Begoli, Chuan Hong, J. Michael Gaziano, Kelly Cho, Junwei Lu, Katherine P. Liao, Marinka Zitnik, Tianxi Cai:
Multimodal representation learning for predicting molecule-disease relations. Bioinform. 39(2) (2023) - [j7]Jacqueline Honerlaw, Yuk-Lam Ho, Francesca Fontin, Jeffrey Gosian, Monika Maripuri, Michael Murray, Rahul Sangar, Ashley Galloway, Andrew J. Zimolzak, Stacey B. Whitbourne, Juan P. Casas, Rachel B. Ramoni, David R. Gagnon, Tianxi Cai, Katherine P. Liao, J. Michael Gaziano, Sumitra Muralidhar, Kelly Cho:
Framework of the Centralized Interactive Phenomics Resource (CIPHER) standard for electronic health data-based phenomics knowledgebase. J. Am. Medical Informatics Assoc. 30(5): 958-964 (2023) - [i1]Jun Wen, Jue Hou, Clara-Lea Bonzel, Yihan Zhao, Victor M. Castro, Vivian S. Gainer, Dana Weisenfeld, Tianrun Cai, Yuk-Lam Ho, Vidul Ayakulangara Panickan, Lauren Costa, Chuan Hong, J. Michael Gaziano, Katherine P. Liao, Junwei Lu, Kelly Cho, Tianxi Cai:
LATTE: Label-efficient Incident Phenotyping from Longitudinal Electronic Health Records. CoRR abs/2305.11407 (2023) - 2022
- [j6]Tianrun Cai, Zeling He, Chuan Hong, Yichi Zhang, Yuk-Lam Ho, Jacqueline Honerlaw, Alon Geva, Vidul Ayakulangara Panickan, Amanda King, David R. Gagnon, J. Michael Gaziano, Kelly Cho, Katherine P. Liao, Tianxi Cai:
Scalable relevance ranking algorithm via semantic similarity assessment improves efficiency of medical chart review. J. Biomed. Informatics 132: 104109 (2022) - [j5]Doudou Zhou, Ziming Gan, Xu Shi, Alina Patwari, Everett Neil Rush, Clara-Lea Bonzel, Vidul Ayakulangara Panickan, Chuan Hong, Yuk-Lam Ho, Tianrun Cai, Lauren Costa, Xiaoou Li, Victor M. Castro, Shawn N. Murphy, Gabriel A. Brat, Griffin M. Weber, Paul Avillach, J. Michael Gaziano, Kelly Cho, Katherine P. Liao, Junwei Lu, Tianxi Cai:
Multiview Incomplete Knowledge Graph Integration with application to cross-institutional EHR data harmonization. J. Biomed. Informatics 133: 104147 (2022) - [c3]Molei Liu, Sara Morini, Xin Xiong, Chuan Hong, Clara-Lea Bonzel, Vidul Ayakulangara Panickan, Everett Neil Rush, Yuk-Lam Ho, Kelly Cho, J. Michael Gaziano, Katherine P. Liao, Tianxi Cai, Tianrun Cai:
Knowledge-Driven Online Multimodal Automated Phenotyping System. AMIA 2022 - 2021
- [j4]Chuan Hong, Everett Neil Rush, Molei Liu, Doudou Zhou, Jiehuan Sun, Aaron Sonabend W., Victor M. Castro, Petra Schubert, Vidul Ayakulangara Panickan, Tianrun Cai, Lauren Costa, Zeling He, Nicholas B. Link, Ronald G. Hauser, J. Michael Gaziano, Shawn N. Murphy, George Ostrouchov, Yuk-Lam Ho, Edmon Begoli, Junwei Lu, Kelly Cho, Katherine P. Liao, Tianxi Cai:
Clinical knowledge extraction via sparse embedding regression (KESER) with multi-center large scale electronic health record data. npj Digit. Medicine 4 (2021)
2010 – 2019
- 2019
- [j3]Katherine P. Liao, Jiehuan Sun, Tianrun A. Cai, Nicholas B. Link, Chuan Hong, Jie Huang, Jennifer E. Huffman, Jessica L. Gronsbell, Yichi Zhang, Yuk-Lam Ho, Victor M. Castro, Vivian S. Gainer, Shawn N. Murphy, Christopher J. O'Donnell, J. Michael Gaziano, Kelly Cho, Peter Szolovits, Isaac S. Kohane, Sheng Yu:
High-throughput multimodal automated phenotyping (MAP) with application to PheWAS. J. Am. Medical Informatics Assoc. 26(11): 1255-1262 (2019) - 2018
- [j2]Jason Vassy, Yuk-Lam Ho, Jacqueline Honerlaw, Kelly Cho, J. Michael Gaziano, Peter W. F. Wilson, David R. Gagnon:
Yield and bias in defining a cohort study baseline from electronic health record data. J. Biomed. Informatics 78: 54-59 (2018) - [c2]Katherine P. Liao, Jiehuan Sun, Tianrun A. Cai, Nicholas B. Link, Chuan Hong, Jie Huang, Jennifer E. Huffman, Jessica L. Gronsbell, Lauren Costa, Victor M. Castro, Vivian S. Gainer, Shawn N. Murphy, J. Michael Gaziano, Kelly Cho, Peter Szolovits, Isaac S. Kohane, Sheng Yu, Tianxi Cai:
High-Throughput Multimodal Automated Phenotyping (MAP) Incorporating Natural Language Processing with Application to PheWAS. AMIA 2018 - 2017
- [c1]Tianrun A. Cai, Andrew Beam, Stephanie Chan, Jacqueline Honerlaw, Yichi Zhang, David R. Gagnon, Kelly Cho, J. Michael Gaziano, Katherine P. Liao, Tianxi Cai:
Improving EHR Chart Review Efficiency via Semantic Similarity Assessment. AMIA 2017
2000 – 2009
- 2004
- [j1]Christopher S. Coffey, Patricia R. Hebert, Marylyn D. Ritchie, Harlan M. Krumholz, J. Michael Gaziano, Paul M. Ridker, Nancy J. Brown, Douglas E. Vaughan, Jason H. Moore:
An application of conditional logistic regression and multifactor dimensionality reduction for detecting gene-gene Interactions on risk of myocardial infarction: The importance of model validation. BMC Bioinform. 5: 49 (2004)
Coauthor Index
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