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ORCIDJennifer L. Reed
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2020 – today
- 2020
[j19]Jessica L. Howe
, Jennifer L. Reed, Katharine T. Adams, Cara Elsholz, Erin M. Augustine, Andrea T. Cruz, Cynthia Mollen, Michelle L. Pickett, Sara Schmidt, Kristin Stukus, Raj M. Ratwani, Monika K. Goyal:
Workflow Analysis Driven Recommendations for Integration of Electronically-Enhanced Sexually Transmitted Infection Screening Tools in Pediatric Emergency Departments. J. Medical Syst. 44(12): 206 (2020)- [j18]Wai Kit Ong, Dylan K. Courtney, Shu Pan, Ramon Bonela Andrade, Patricia J. Kiley, Brian F. Pfleger, Jennifer L. Reed:
Model-driven analysis of mutant fitness experiments improves genome-scale metabolic models of Zymomonas mobilis ZM4. PLoS Comput. Biol. 16(8) (2020)
2010 – 2019
- 2018
- [j17]Mingyuan Tian, Jennifer L. Reed:
Integrating proteomic or transcriptomic data into metabolic models using linear bound flux balance analysis. Bioinform. 34(22): 3882-3888 (2018) - 2017
- [j16]Matthew R. Long, Jennifer L. Reed:
Improving flux predictions by integrating data from multiple strains. Bioinform. 33(6): 893-900 (2017) - 2015
- [j15]Joshua J. Hamilton, Montserrat Calixto Contreras, Jennifer L. Reed:
Thermodynamics and H2 Transfer in a Methanogenic, Syntrophic Community. PLoS Comput. Biol. 11(7) (2015) - 2014
- [j14]Wai Ong, Trang T. Vu, Klaus N. Lovendahl, Jenna M. Llull, Margrethe H. Serres, Margaret F. Romine, Jennifer L. Reed:
Comparisons of Shewanella strains based on genome annotations, modeling, and experiments. BMC Syst. Biol. 8: 31 (2014) - 2013
- [j13]Cameron Cotten, Jennifer L. Reed:
Mechanistic analysis of multi-omics datasets to generate kinetic parameters for constraint-based metabolic models. BMC Bioinform. 14: 32 (2013) - [j12]David J. Baumler, Bing Ma, Jennifer L. Reed, Nicole T. Perna:
Inferring ancient metabolism using ancestral core metabolic models of enterobacteria. BMC Syst. Biol. 7: 46 (2013) - 2012
- [j11]Jan Schellenberger, Daniel C. Zielinski, Wing Choi, Sunthosh Madireddi, Vasiliy Portnoy, David A. Scott, Jennifer L. Reed, Andrei Osterman, Bernhard Ø. Palsson:
Predicting outcomes of steady-state 13C isotope tracing experiments using Monte Carlo sampling. BMC Syst. Biol. 6: 9 (2012) - [j10]Trang T. Vu, Sergey M. Stolyar, Grigoriy E. Pinchuk, Eric A. Hill, Leo A. Kucek, Roslyn N. Brown, Mary S. Lipton, Andrei Osterman, Jim K. Fredrickson, Allan E. Konopka, Alexander S. Beliaev, Jennifer L. Reed:
Genome-Scale Modeling of Light-Driven Reductant Partitioning and Carbon Fluxes in Diazotrophic Unicellular Cyanobacterium Cyanothece sp. ATCC 51142. PLoS Comput. Biol. 8(4) (2012) - [j9]Jennifer L. Reed:
Shrinking the Metabolic Solution Space Using Experimental Datasets. PLoS Comput. Biol. 8(8) (2012) - 2011
- [j8]Ines Thiele, Daniel R. Hyduke, Benjamin Steeb, Guy Fankam, Douglas K. Allen, Susanna Bazzani, Pep Charusanti, Feng-Chi Chen, Ronan M. T. Fleming, Chao A. Hsiung, Sigrid C. J. De Keersmaecker, Yu-Chieh Liao, Kathleen Marchal, Monica L. Mo, Emre Özdemir, Anu Raghunathan, Jennifer L. Reed, Sook-Il Shin, Sara Sigurbjörnsdóttir, Jonas Steinmann, Suresh Sudarsan, Neil Swainston, Inge M. Thijs, Karsten Zengler, Bernhard O. Palsson, Joshua N. Adkins, Dirk Bumann:
A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2. BMC Syst. Biol. 5: 8 (2011) - [j7]Saheed Imam, Safak Yilmaz, Ugur Sohmen, Alexander S. Gorzalski, Jennifer L. Reed, Daniel R. Noguera, Timothy J. Donohue:
iRsp1095: A genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network. BMC Syst. Biol. 5: 116 (2011) - [j6]David J. Baumler, Roman G. Peplinski, Jennifer L. Reed, Jeremy D. Glasner, Nicole T. Perna:
The evolution of metabolic networks of E. coli. BMC Syst. Biol. 5: 182 (2011) - 2010
- [j5]Joonhoon Kim, Jennifer L. Reed:
OptORF: Optimal metabolic and regulatory perturbations for metabolic engineering of microbial strains. BMC Syst. Biol. 4: 53 (2010) - [j4]Grigoriy E. Pinchuk, Eric A. Hill, Oleg V. Geydebrekht, Jessica De Ingeniis, Xiaolin Zhang, Andrei Osterman, James H. Scott, Samantha B. Reed, Margaret F. Romine, Allan E. Konopka, Alexander S. Beliaev, Jim K. Fredrickson, Jennifer L. Reed:
Constraint-Based Model of Shewanella oneidensis MR-1 Metabolism: A Tool for Data Analysis and Hypothesis Generation. PLoS Comput. Biol. 6(6) (2010) - [j3]Dipak Barua, Joonhoon Kim, Jennifer L. Reed:
An Automated Phenotype-Driven Approach (GeneForce) for Refining Metabolic and Regulatory Models. PLoS Comput. Biol. 6(10) (2010)
2000 – 2009
- 2009
- [j2]Anu Raghunathan, Jennifer L. Reed, Sook-Il Shin, Bernhard Ø. Palsson, Simon Daefler:
Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction. BMC Syst. Biol. 3: 38 (2009) - 2007
- [j1]Osbaldo Resendis-Antonio, Jennifer L. Reed, Sergio Encarnación, Julio Collado-Vides, Bernhard Ø. Palsson:
Metabolic Reconstruction and Modeling of Nitrogen Fixation in Rhizobium etli. PLoS Comput. Biol. 3(10) (2007)
Coauthor Index
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