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Jun Yu 0004
Person information
- affiliation: Chinese Academy of Sciences, Beijing Institute of Genomics, China
- affiliation (former): Zhejiang University, James D. Watson Institute of Genome Sciences, China
Other persons with the same name
- Jun Yu — disambiguation page
- Jun Yu 0001
— University of Science and Technology of China, Department of Automation, Hefei, China
- Jun Yu 0002
— Hangzhou Dianzi University, School of Computer Science, China (and 5 more)
- Jun Yu 0003 — Dalian University of Technology, Faculty of Electronic Information and Electrical Engineering, China
- Jun Yu 0005
— Umeå University, Umeå, Sweden
- Jun Yu 0006
— Singapore Management University, Singapore, Singapore
- Jun Yu 0007
— Kochi University of Technology, Kami, Japan
- Jun Yu 0008
— London School of Economics and Political Science, London, UK
- Jun Yu 0009
— Li Ka Shing Institute of Health Sciences, Hong Kong, China (and 1 more)
- Jun Yu 0010
— Fudan University, State Key Lab of ASIC & System, Shanghai, China
- Jun Yu 0011 — Zhengzhou University of Light Industry, College of Computer and Communication Engineering, China (and 1 more)
- Jun Yu 0012
— Niigata University, Institute of Science and Technology, Niigata-shi, Japan
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2020 – today
- 2023
- [j71]Jingqi Zhou
, Ake Liu
, Funan He
, Yunbin Zhang
, Libing Shen
, Jun Yu
, Xiang Zhang
:
Draft Genome of White-blotched River Stingray Provides Novel Clues for Niche Adaptation and Skeleton Formation. Genom. Proteom. Bioinform. 21(3): 501-514 (2023) - [j70]Jun Yu
:
Toward Inclusiveness and Thoroughness: A Paradigm Shift from More-Ever-Omics to Holovivology. Genom. Proteom. Bioinform. 21(5): 895-896 (2023) - [j69]Zhang Zhang
, Songnian Hu
, Jun Yu
:
Toward a New Paradigm of Genomics Research - Celebration of the 20th Anniversary of Beijing Institute of Genomics. Genom. Proteom. Bioinform. 21(5): 904-909 (2023) - [j68]Jingfa Xiao
, Jun Yu
:
T2T-YAO, T2T-SHUN, and More. Genom. Proteom. Bioinform. 21(6): 1081-1082 (2023) - 2022
- [j67]Shaochuan Li, Yuning Yang, Xin Wang, Jun Li
, Jun Yu, Xiangtao Li, Ka-Chun Wong:
Colorectal cancer subtype identification from differential gene expression levels using minimalist deep learning. BioData Min. 15(1) (2022) - [c2]Ming Xiao, Ruiying Yin, Pengbo Gao, Jun Yu, Fubo Ma, Zichun Dai, Le Zhang:
Position-Defined CpG Islands Provide Complete Co-methylation Indexing for Human Genes. ICIC (2) 2022: 319-333 - 2021
- [j66]Le Zhang
, Zichun Dai, Jun Yu, Ming Xiao:
CpG-island-based annotation and analysis of human housekeeping genes. Briefings Bioinform. 22(1): 515-525 (2021) - [j65]Qingren Meng, Yanan Chu, Changjun Shao, Jing Chen, Jian Wang, Zhancheng Gao, Jun Yu, Yu Kang
:
Roles of host small RNAs in the evolution and host tropism of coronaviruses. Briefings Bioinform. 22(2): 1096-1105 (2021) - [j64]Saifur Rahaman
, Xiangtao Li, Jun Yu, Ka-Chun Wong
:
CancerEMC: frontline non-invasive cancer screening from circulating protein biomarkers and mutations in cell-free DNA. Bioinform. 37(19): 3319-3327 (2021) - [j63]Ming Xiao
, Guangdi Liu, Jianghang Xie, Zichun Dai, Zihao Wei, Ziyao Ren, Jun Yu, Le Zhang
:
2019nCoVAS: Developing the Web Service for Epidemic Transmission Prediction, Genome Analysis, and Psychological Stress Assessment for 2019-nCoV. IEEE ACM Trans. Comput. Biol. Bioinform. 18(4): 1250-1261 (2021) - 2020
- [j62]Zhang Zhang
, Shuhui Song
, Jun Yu
, Wenming Zhao
, Jing-Fa Xiao
, Yiming Bao
:
The Elements of Data Sharing. Genom. Proteom. Bioinform. 18(1): 1-4 (2020) - [j61]Yuan Liang
, Dengxue Lu
, Sen Wang
, Yuhui Zhao
, Shenghan Gao
, Rongbing Han
, Jun Yu
, Weili Zheng
, Jianing Geng
, Songnian Hu
:
Genome Assembly and Pathway Analysis of Edible Mushroom Agrocybe cylindracea. Genom. Proteom. Bioinform. 18(3): 341-351 (2020) - [j60]Shan Chi
, Guoliang Wang
, Tao Liu
, Xumin Wang
, Cui Liu
, Yuemei Jin
, Hongxin Yin
, Xin Xu
, Jun Yu
:
Transcriptomic and Proteomic Analysis of Mannitol-metabolism-associated Genes in Saccharina japonica. Genom. Proteom. Bioinform. 18(4): 415-429 (2020) - [j59]Jun Yu
:
From Mutation Signature to Molecular Mechanism in the RNA World: A Case of SARS-CoV-2. Genom. Proteom. Bioinform. 18(6): 627-639 (2020) - [j58]Xufei Teng
, Qianpeng Li
, Zhao Li
, Yuansheng Zhang
, Guangyi Niu
, Jing-Fa Xiao
, Jun Yu
, Zhang Zhang
, Shuhui Song
:
Compositional Variability and Mutation Spectra of Monophyletic SARS-CoV-2 Clades. Genom. Proteom. Bioinform. 18(6): 648-663 (2020) - [j57]Ming Xiao
, Xiangyu Yang, Jun Yu, Le Zhang
:
CGIDLA: Developing the Web Server for CpG Island Related Density and LAUPs (Lineage-Associated Underrepresented Permutations) Study. IEEE ACM Trans. Comput. Biol. Bioinform. 17(6): 2148-2154 (2020)
2010 – 2019
- 2019
- [j56]Zhang Zhang
, Jun Yu
, Frank Eisenhaber
, Xin Gao
, Takashi Gojobori
:
In Memory of Vladimir B. Bajic (1952-2019). Genom. Proteom. Bioinform. 17(5): 473-474 (2019) - [j55]Xing Shi
, Zhancheng Gao
, Qiang Lin
, Liping Zhao
, Qin Ma
, Yu Kang
, Jun Yu
:
Meta-analysis Reveals Potential Influence of Oxidative Stress on the Airway Microbiomes of Cystic Fibrosis Patients. Genom. Proteom. Bioinform. 17(6): 590-602 (2019) - 2018
- [j54]Le Zhang
, Ming Xiao, Jingsong Zhou, Jun Yu:
Lineage-associated underrepresented permutations (LAUPs) of mammalian genomic sequences based on a Jellyfish-based LAUPs analysis application (JBLA). Bioinform. 34(21): 3624-3630 (2018) - [j53]Jun Yu
:
A Scientist Guerilla Fighter in the Frontiers of Bioinformatics - In Memory of Bailin Hao. Genom. Proteom. Bioinform. 16(5): 307-309 (2018) - [j52]Wanfei Liu
, Shuangyang Wu
, Qiang Lin
, Shenghan Gao
, Feng Ding
, Xiaowei Zhang
, Hasan Awad Aljohi
, Jun Yu
, Songnian Hu
:
RGAAT: A Reference-based Genome Assembly and Annotation Tool for New Genomes and Upgrade of Known Genomes. Genom. Proteom. Bioinform. 16(5): 373-381 (2018) - [j51]Shuhui Song
, Dongmei Tian
, Zhang Zhang
, Songnian Hu
, Jun Yu
:
Rice Genomics: over the Past Two Decades and into the Future. Genom. Proteom. Bioinform. 16(6): 397-404 (2018) - [j50]Shuangyang Wu
, Wanfei Liu, Hasan Awad Aljohi, Sarah A. Alromaih, Ibrahim O. Alanazi
, Qiang Lin, Jun Yu, Songnian Hu
:
REDO: RNA Editing Detection in Plant Organelles Based on Variant Calling Results. J. Comput. Biol. 25(5): 509-516 (2018) - 2017
- [j49]Xin Sheng, Jiayan Wu
, Qianqian Sun, Xue Li, Feng Xian
, Manman Sun, Wan Fang, Meili Chen, Jun Yu, Jing-Fa Xiao:
MTD: a mammalian transcriptomic database to explore gene expression and regulation. Briefings Bioinform. 18(1): 28-36 (2017) - [j48]Hasan Awad Aljohi, Wanfei Liu
, Qiang Lin, Jun Yu, Songnian Hu
:
ISVASE: identification of sequence variant associated with splicing event using RNA-seq data. BMC Bioinform. 18(1): 320 (2017) - [j47]Jun Yu
:
A Piece of History that Cannot Be Missed for Precision Medicine. Genom. Proteom. Bioinform. 15(1): 1-2 (2017) - [j46]Jun Yu
:
A Step Forward in Precision Medicine on "One Belt One Road". Genom. Proteom. Bioinform. 15(4): 219 (2017) - 2016
- [j45]Jun Yu
:
Precision Medicine: What Do We Expect in the Scope of Basic Biomedical Sciences? Genom. Proteom. Bioinform. 14(1): 1-3 (2016) - [j44]Yu Xue
, Eric-Wubbo Lameijer
, Kai Ye
, Kunlin Zhang
, Suhua Chang
, Xiaoyue Wang
, Jianmin Wu
, Ge Gao
, Fangqing Zhao
, Jian Li
, Chunsheng Han
, Shuhua Xu
, Jing-Fa Xiao
, Xuerui Yang
, Xiaomin Ying
, Xuegong Zhang
, Wei-Hua Chen
, Yun Liu
, Zhang Zhang
, Kun Huang
, Jun Yu
:
Precision Medicine: What Challenges Are We Facing? Genom. Proteom. Bioinform. 14(5): 253-261 (2016) - 2015
- [j43]Dong Zou
, Lina Ma
, Jun Yu
, Zhang Zhang
:
Biological Databases for Human Research. Genom. Proteom. Bioinform. 13(1): 55-63 (2015) - [j42]Jing-Fa Xiao
, Zhewen Zhang
, Jiayan Wu
, Jun Yu
:
A Brief Review of Software Tools for Pangenomics. Genom. Proteom. Bioinform. 13(1): 73-76 (2015) - [j41]Lina Ma
, Ang Li, Dong Zou
, Xingjian Xu, Lin Xia, Jun Yu, Vladimir B. Bajic
, Zhang Zhang
:
LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs. Nucleic Acids Res. 43(Database-Issue): 187-192 (2015) - [j40]Dapeng Wang
, Jun Yu:
Plastid-LCGbase: a collection of evolutionarily conserved plastid-associated gene pairs. Nucleic Acids Res. 43(Database-Issue): 990-995 (2015) - 2014
- [j39]Yongbing Zhao, Xinmiao Jia, Junhui Yang, Yunchao Ling, Zhang Zhang
, Jun Yu, Jiayan Wu
, Jing-Fa Xiao:
PanGP: A tool for quickly analyzing bacterial pan-genome profile. Bioinform. 30(9): 1297-1299 (2014) - [j38]Fu-Qiang Wang, Jun Zhong
, Ying Zhao, Jing-Fa Xiao, Jing Liu, Meng Dai, Guizhen Zheng, Li Zhang, Jun Yu, Jiayan Wu
, Baoling Duan:
Genome sequencing of high-penicillin producing industrial strain of Penicillium chrysogenum. BMC Genom. 15(S-1): S11 (2014) - [j37]Jiayan Wu
, Jing-Fa Xiao, Zhang Zhang
, Xumin Wang, Songnian Hu
, Jun Yu:
Ribogenomics: the Science and Knowledge of RNA. Genom. Proteom. Bioinform. 12(2): 57-63 (2014) - [j36]Wei Xu, Chengqi Xin, Qiang Lin, Feng Ding
, Wei Gong, Yuanyuan Zhou, Jun Yu, Peng Cui, Songnian Hu
:
Adolescent Mouse Takes on An Active Transcriptomic Expression During Postnatal Cerebral Development. Genom. Proteom. Bioinform. 12(3): 111-119 (2014) - [j35]Zhancheng Gao, Yu Kang, Jun Yu, Lufeng Ren:
Human Pharyngeal Microbiome May Play A Protective Role in Respiratory Tract Infections. Genom. Proteom. Bioinform. 12(3): 144-150 (2014) - [j34]Linlin Pan
, Wei Gong, Yuanyuan Zhou, Xiaonuan Li, Jun Yu, Songnian Hu
:
A Comprehensive Transcriptomic Analysis of Infant and Adult Mouse Ovary. Genom. Proteom. Bioinform. 12(5): 239-248 (2014) - [j33]Zhang Zhang
, Jian Sang, Lina Ma
, Gang Wu, Hao Wu, Dawei Huang, Dong Zou
, Siqi Liu, Ang Li, Lili Hao, Ming Tian, Chao Xu, Xumin Wang, Jiayan Wu
, Jing-Fa Xiao, Lin Dai, Ling-Ling Chen, Songnian Hu
, Jun Yu:
RiceWiki: a wiki-based database for community curation of rice genes. Nucleic Acids Res. 42(Database-Issue): 1222-1228 (2014) - 2013
- [j32]Zhang Zhang
, Jun Yu:
Does the Genetic Code Have A Eukaryotic Origin? Genom. Proteom. Bioinform. 11(1): 41-55 (2013) - [j31]Yuli Li, Shuhui Song, Cuiping Li, Jun Yu:
MeRIP-PF: An Easy-to-use Pipeline for High-resolution Peak-finding in MeRIP-Seq Data. Genom. Proteom. Bioinform. 11(1): 72-75 (2013) - [j30]Dapeng Wang
, Yan Xia, Xinna Li, Lixia Hou, Jun Yu:
The Rice Genome Knowledgebase (RGKbase): an annotation database for rice comparative genomics and evolutionary biology. Nucleic Acids Res. 41(Database-Issue): 1199-1205 (2013) - 2012
- [j29]Yongbing Zhao, Jiayan Wu
, Junhui Yang, Shixiang Sun
, Jing-Fa Xiao, Jun Yu:
PGAP: pan-genomes analysis pipeline. Bioinform. 28(3): 416-418 (2012) - [j28]Zhang Zhang
, Jun Li
, Peng Cui, Feng Ding
, Ang Li, Jeffrey P. Townsend
, Jun Yu:
Codon Deviation Coefficient: a novel measure for estimating codon usage bias and its statistical significance. BMC Bioinform. 13: 43 (2012) - [j27]Peng Cui, Feng Ding
, Qiang Lin, Lingfang Zhang, Ang Li, Zhang Zhang
, Songnian Hu
, Jun Yu:
Distinct Contributions of Replication and Transcription to Mutation Rate Variation of Human Genomes. Genom. Proteom. Bioinform. 10(1): 4-10 (2012) - [j26]Peng Cui, Qiang Lin, Feng Ding, Songnian Hu
, Jun Yu:
The Transcript-centric Mutations in Human Genomes. Genom. Proteom. Bioinform. 10(1): 11-22 (2012) - [j25]Peng Cui, Wanfei Liu, Yuhui Zhao, Qiang Lin, Feng Ding, Chengqi Xin, Jianing Geng, Shuhui Song, Fanglin Sun, Songnian Hu
, Jun Yu:
The Association Between H3K4me3 and Antisense Transcription. Genom. Proteom. Bioinform. 10(2): 74-81 (2012) - [j24]Peng Cui, Wanfei Liu, Yuhui Zhao, Qiang Lin, Daoyong Zhang, Feng Ding
, Chengqi Xin, Zhang Zhang
, Shuhui Song, Fanglin Sun, Jun Yu, Songnian Hu
:
Comparative Analyses of H3K4 and H3K27 Trimethylations Between the Mouse Cerebrum and Testis. Genom. Proteom. Bioinform. 10(2): 82-93 (2012) - [j23]Zhang Zhang
, Jun Yu:
The Pendulum Model for Genome Compositional Dynamics: from the Four Nucleotides to the Twenty Amino Acids. Genom. Proteom. Bioinform. 10(4): 175-180 (2012) - [j22]Hao Wu, Hongzhu Qu, Ning Wan, Zhang Zhang
, Songnian Hu
, Jun Yu:
Strand-biased Gene Distribution in Bacteria Is Related to both Horizontal Gene Transfer and Strand-biased Nucleotide Composition. Genom. Proteom. Bioinform. 10(4): 186-196 (2012) - [j21]Lina Ma
, Linghu Nie, Jing Liu, Bing Zhang, Shuhui Song, Min Sun, Jin Yang, Yadong Yang, Xiangdong Fang, Songnian Hu
, Yongliang Zhao, Jun Yu:
An RNA-seq-based Gene Expression Profiling of Radiation-induced Tumorigenic Mammary Epithelial Cells. Genom. Proteom. Bioinform. 10(6): 326-335 (2012) - [c1]Jingde Bu, Jiayan Wu, Meili Chen, Jing-Fa Xiao, Jun Yu, Xuebin Chi, Zhong Jin:
BAsplice: Bi-direction alignment for detecting splice junctions. ISB 2012: 252-255 - 2011
- [j20]Zhang Zhang
, Jun Yu:
On the Organizational Dynamics of the Genetic Code. Genom. Proteom. Bioinform. 9(1-2): 21-29 (2011) - [j19]Tongwu Zhang, Yingfeng Luo, Kan Liu
, Linlin Pan, Bing Zhang, Jun Yu, Songnian Hu
:
BIGpre: A Quality Assessment Package for Next-Generation Sequencing Data. Genom. Proteom. Bioinform. 9(6): 238-244 (2011) - 2010
- [j18]Dapeng Wang
, Yubin Zhang, Zhang Zhang
, Jiang Zhu, Jun Yu:
KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies. Genom. Proteom. Bioinform. 8(1): 77-80 (2010) - [j17]Ximiao He
, Shu Tao
, Jing Jin, Songnian Hu
, Jun Yu:
The Most Redundant Sequences in Human CpG Island Library Are Derived from Mitochondrial Genome. Genom. Proteom. Bioinform. 8(2): 81-91 (2010) - [j16]Kaifu Chen, Lei Wang, Meng Yang, Jiucheng Liu, Chengqi Xin, Songnian Hu
, Jun Yu:
Sequence Signatures of Nucleosome Positioning in Caenorhabditis elegans. Genom. Proteom. Bioinform. 8(2): 92-102 (2010) - [j15]Jun Wang
, Jianguo Zhang
, Ruiqiang Li, Hongkun Zheng, Jun Li
, Yong Zhang, Heng Li
, Peixiang Ni, Songgang Li, Shengting Li, Jingqiang Wang, Dongyuan Liu, Jason E. McDermott
, Ram Samudrala, Siqi Liu, Jian Wang, Huanming Yang
, Jun Yu, Gane Ka-Shu Wong
:
Evolutionary Transients in the Rice Transcriptome. Genom. Proteom. Bioinform. 8(4): 211-228 (2010) - [j14]Wanfei Liu, Dawei Huang, Kan Liu
, Songnian Hu
, Jun Yu, Gang Gao
, Shuhui Song:
Discovery, Identification and Comparative Analysis of Non-Specific Lipid Transfer Protein (nsLtp) Family in Solanaceae. Genom. Proteom. Bioinform. 8(4): 229-237 (2010)
2000 – 2009
- 2009
- [j13]Guoqiang Zhang, Lingxia Zhang, Mingcheng Zhang, Linlin Pan, Fengyu Wang, Jun Huang, Guoli Li, Jun Yu, Songnian Hu
:
Screening and Assessing 11 Mycobacterium tuberculosis Proteins as Potential Serodiagnostical Markers for Discriminating TB Patients from BCG Vaccinees. Genom. Proteom. Bioinform. 7(3): 107-115 (2009) - [j12]Dapeng Wang
, Song Zhang, Fuhong He
, Jiang Zhu, Songnian Hu
, Jun Yu:
How Do Variable Substitution Rates Influence Ka and Ks Calculations? Genom. Proteom. Bioinform. 7(3): 116-127 (2009) - [j11]Yimei Cai, Xiaomin Yu, Songnian Hu
, Jun Yu:
A Brief Review on the Mechanisms of miRNA Regulation. Genom. Proteom. Bioinform. 7(4): 147-154 (2009) - 2008
- [j10]Weiwei Wang, Qibin Luo, Haiyan Guo, Peter Bossier
, Gilbert Van Stappen, Patrick Sorgeloos, Naihong Xin, Qishi Sun, Songnian Hu
, Jun Yu:
Phylogenetic Analysis of Brine Shrimp (Artemia) in China Using DNA Barcoding. Genom. Proteom. Bioinform. 6(3-4): 155-162 (2008) - 2007
- [j9]Jing-Fa Xiao, Jun Yu:
A Scenario on the Stepwise Evolution of the Genetic Code. Genom. Proteom. Bioinform. 5(3-4): 143-151 (2007) - [j8]Suhua Chang, Jiajie Zhang, Xiaoyun Liao, Xinxing Zhu, Dahai Wang, Jiang Zhu, Tao Feng, Baoli Zhu, George F. Gao, Jian Wang, Huanming Yang
, Jun Yu, Jing Wang:
Influenza Virus Database (IVDB): an integrated information resource and analysis platform for influenza virus research. Nucleic Acids Res. 35(Database-Issue): 376-380 (2007) - 2006
- [j7]Zhang Zhang
, Jun Yu:
Evaluation of Six Methods for Estimating Synonymous and Nonsynonymous Substitution Rates. Genom. Proteom. Bioinform. 4(3): 173-181 (2006) - [j6]Xiao-Qian Zhao, Jian-Fei Hu, Jun Yu:
Comparative Analysis of Eubacterial DNA Polymerase III Alpha Subunits. Genom. Proteom. Bioinform. 4(4): 203-211 (2006) - [j5]Zhang Zhang
, Jun Li
, Xiao-Qian Zhao, Jun Wang
, Gane Ka-Shu Wong
, Jun Yu:
KaKs_Calculator: Calculating Ka and Ks Through Model Selection and Model Averaging. Genom. Proteom. Bioinform. 4(4): 259-263 (2006) - 2005
- [j4]Jing Wang, Qingyou Xia, Ximiao He
, Mingtao Dai, Jue Ruan
, Jie Chen, Guo Yu, Haifeng Yuan, Yafeng Hu, Ruiqiang Li, Tao Feng, Chen Ye, Cheng Lu, Jun Wang
, Songgang Li, Gane Ka-Shu Wong
, Huanming Yang
, Jian Wang, Zhonghuai Xiang, Zeyang Zhou, Jun Yu:
SilkDB: a knowledgebase for silkworm biology and genomics. Nucleic Acids Res. 33(Database-Issue): 399-402 (2005) - [j3]Jing Wang, Ximiao He
, Jue Ruan
, Mingtao Dai, Jie Chen, Yong Zhang, Yafeng Hu, Chen Ye, Shengting Li, Lijuan Cong, Lin Fang, Bin Liu, Songgang Li, Jian Wang, David W. Burt
, Gane Ka-Shu Wong
, Jun Yu, Huanming Yang
, Jun Wang
:
ChickVD: a sequence variation database for the chicken genome. Nucleic Acids Res. 33(Database-Issue): 438-441 (2005) - [j2]Ruiqiang Li, Jia Ye, Songgang Li, Jing Wang, Yujun Han, Chen Ye, Jian Wang, Huanming Yang
, Jun Yu, Gane Ka-Shu Wong
, Jun Wang
:
ReAS: Recovery of Ancestral Sequences for Transposable Elements from the Unassembled Reads of a Whole Genome Shotgun. PLoS Comput. Biol. 1(4) (2005) - 2004
- [j1]Wenming Zhao, Jing Wang, Ximiao He, Xiaobing Huang, Yongzhi Jiao, Mingtao Dai, Shulin Wei, Jian Fu, Ye Chen, Xiaoyu Ren, Yong Zhang, Peixiang Ni, Jianguo Zhang
, Songgang Li, Jian Wang, Gane Ka-Shu Wong
, Hongyu Zhao
, Jun Yu, Huanming Yang, Jun Wang
:
BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics. Nucleic Acids Res. 32(Database-Issue): 377-382 (2004)
Coauthor Index
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