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ORCIDShugo Nakamura
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2020 – today
- 2024
[c8]Tuan Nguyen, Hirotada Honda, Takashi Sano, Vinh Nguyen, Shugo Nakamura, Tan Minh Nguyen:
From Coupled Oscillators to Graph Neural Networks: Reducing Over-smoothing via a Kuramoto Model-based Approach. AISTATS 2024: 2710-2718- [c7]Phuong Dinh, Deddy Jobson, Takashi Sano, Hirotada Honda, Shugo Nakamura:
Understanding Neural ODE prediction decision using SHAP. NLDL 2024: 53-58 - 2023
- [j10]Hirotada Honda, Takashi Sano, Shugo Nakamura, Mitsuaki Ueno, Hiroki Hanazawa, Nguyen Manh Duc Tuan:
An ODE-based neural network with Bayesian optimization. JSIAM Lett. 15: 101-104 (2023) - [i1]Tuan Nguyen, Tan M. Nguyen, Hirotada Honda, Takashi Sano, Vinh Nguyen, Shugo Nakamura:
From Coupled Oscillators to Graph Neural Networks: Reducing Over-smoothing via a Kuramoto Model-based Approach. CoRR abs/2311.03260 (2023)
2010 – 2019
- 2017
- [j9]Masaki Banno, Yusuke Komiyama
, Cao Wei, Yuya Oku, Kokoro Ueki, Kazuya Sumikoshi, Shugo Nakamura, Tohru Terada, Kentaro Shimizu:
Development of a sugar-binding residue prediction system from protein sequences using support vector machine. Comput. Biol. Chem. 66: 36-43 (2017) - 2015
- [j8]Masayuki Yarimizu, Cao Wei, Yusuke Komiyama, Kokoro Ueki, Shugo Nakamura, Kazuya Sumikoshi, Tohru Terada, Kentaro Shimizu:
Tyrosine Kinase Ligand-Receptor Pair Prediction by Using Support Vector Machine. Adv. Bioinformatics 2015: 528097:1-528097:5 (2015) - 2012
- [j7]Satoshi Yamasaki, Shugo Nakamura, Kazuhiko Fukui:
Prospects for Tertiary Structure Prediction of RNA Based on Secondary Structure Information. J. Chem. Inf. Model. 52(2): 557-567 (2012) - 2011
- [c6]Masaki Ishihara, Shugo Nakamura, Takayuki Baba, Masahiko Sugimura, Susumu Endo, Yusuke Uehara, Daiki Masumoto:
Industry Track: An Image Classification and Browsing System for Farm Inspection. ISM 2011: 357-362 - 2010
- [j6]Seizi Someya, Masanori Kakuta, Mizuki Morita, Kazuya Sumikoshi, Cao Wei, Ge Zhenyi, Osamu Hirose, Shugo Nakamura, Tohru Terada, Kentaro Shimizu:
Prediction of Carbohydrate-Binding Proteins from Sequences Using Support Vector Machines. Adv. Bioinformatics 2010: 289301:1-289301:9 (2010)
2000 – 2009
- 2009
- [c5]Cao Wei, Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Katsuhiko Kitamoto, Kentaro Shimizu:
Computational Protocol for Screening GPI-anchored Proteins. BICoB 2009: 164-175 - 2008
- [j5]Masanori Kakuta, Shugo Nakamura, Kentaro Shimizu:
Prediction of Protein-Protein Interaction Sites Using Only Sequence Information and Using Both Sequence and Structural Information. Inf. Media Technol. 3(2): 351-361 (2008) - 2006
- [c4]Cao Wei, Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Kentaro Shimizu:
Insight of the Signal Motif of GPI-(like)-anchored Proteins by using SVM. BIOCOMP 2006: 541-546 - 2004
- [j4]Akira Nomoto, Yasuo Watanabe, Wataru Kaneko, Shugo Nakamura, Kentaro Shimizu:
Distributed Shared Arrays: Portable Shared-Memory Programming Interface for Multiple Computer Systems. Clust. Comput. 7(1): 65-72 (2004) - [c3]Akira Nomoto, Wataru Kaneko, Tohru Terada, Shugo Nakamura, Kentaro Shimizu:
Programming Environment Based on Distributed Shared Arrays for High-Performance Scientific Computing. SAINT Workshops 2004: 630-637 - 2003
- [c2]Wataru Kaneko, Akira Nomoto, Yasuo Watanabe, Shugo Nakamura, Kentaro Shimizu:
Design and Implementation of a Parallel Programming Environment Based on Distributed Shared Arrays. ISHPC 2003: 402-411 - 2002
- [j3]Shugo Nakamura, Daisuke Kyono, Mitsunori Ikeguchi, Kentaro Shimizu:
New method for parallel computation of Hessian matrix of conformational energy function in internal coordinates. J. Comput. Chem. 23(4): 463-469 (2002) - [c1]Masakazu Sekijima, Shinya Takasaki, Shugo Nakamura, Kentaro Shimizu:
Automatic Improvement of Scheduling Policies in Parsley Parallel Programming Environment. IASTED PDCS 2002: 375-380
1990 – 1999
- 1999
- [j2]Hiroshi Yoshikawa, Mitsunori Ikeguchi, Shugo Nakamura, Kentaro Shimizu, Junta Doi:
Prediction of protein structure classes and secondary structures by means of hidden Markov models. Syst. Comput. Jpn. 30(13): 13-22 (1999) - 1998
- [j1]Shugo Nakamura, Mitsunori Ikeguchi, Kentaro Shimizu:
Parallel algorithm for efficient calculation of second derivatives of conformational energy function in internal coordinates. J. Comput. Chem. 19(15): 1716-1723 (1998)
Coauthor Index
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