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Patric Hagmann
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2020 – today
- 2023
- [j29]Joan Rué Queralt
, Valentina Mancini
, Vincent Rochas, Caren Latrèche, Peter J. Uhlhaas
, Christoph M. Michel, Gijs Plomp, Stephan Eliez
, Patric Hagmann
:
The coupling between the spatial and temporal scales of neural processes revealed by a joint time-vertex connectome spectral analysis. NeuroImage 280: 120337 (2023) - [j28]Tommaso Di Noto
, Guillaume Marie, Sébastien Tourbier
, Yasser Alemán-Gómez
, Oscar Esteban
, Guillaume Saliou, Meritxell Bach Cuadra, Patric Hagmann
, Jonas Richiardi
:
Towards Automated Brain Aneurysm Detection in TOF-MRA: Open Data, Weak Labels, and Anatomical Knowledge. Neuroinformatics 21(1): 21-34 (2023) - 2022
- [j27]Sébastien Tourbier
, Joan Rué Queralt
, Katharina Glomb
, Yasser Alemán-Gómez
, Emeline Mullier
, Alessandra Griffa
, Mikkel Schöttner
, Jonathan Wirsich
, Mustafa Anil Tuncel
, Jakub Jancovic
, Meritxell Bach Cuadra
, Patric Hagmann
:
Connectome Mapper 3: A Flexible and Open-Source Pipeline Software for Multiscale Multimodal Human Connectome Mapping. J. Open Source Softw. 7(74): 4248 (2022) - [i5]Tommaso Di Noto, Meritxell Bach Cuadra, Chirine Atat, Eduardo Gamito Teiga, Monika Hegi, Andreas Hottinger, Patric Hagmann, Jonas Richiardi
:
Transfer learning with weak labels from radiology reports: application to glioma change detection. CoRR abs/2210.09698 (2022) - 2021
- [j26]Vincent Bazinet
, Reinder Vos de Wael, Patric Hagmann, Boris C. Bernhardt
, Bratislav Misic:
Multiscale communication in cortico-cortical networks. NeuroImage 243: 118546 (2021) - [j25]Joan Rué Queralt
, Katharina Glomb, David Pascucci
, Sébastien Tourbier, Margherita Carboni, Serge Vulliémoz, Gijs Plomp, Patric Hagmann:
The connectome spectrum as a canonical basis for a sparse representation of fast brain activity. NeuroImage 244: 118611 (2021) - [c12]Hélène Lajous
, Tom Hilbert
, Christopher W. Roy
, Sébastien Tourbier
, Priscille de Dumast
, Yasser Alemán-Gómez
, Thomas Yu, Hamza Kebiri
, Jean-Baptiste Ledoux
, Patric Hagmann
, Reto Meuli
, Vincent Dunet
, Mériam Koob
, Matthias Stuber
, Tobias Kober
, Meritxell Bach Cuadra
:
Simulated Half-Fourier Acquisitions Single-shot Turbo Spin Echo (HASTE) of the Fetal Brain: Application to Super-Resolution Reconstruction. UNSURE/PIPPI@MICCAI 2021: 157-167 - [c11]Tommaso Di Noto
, Chirine Atat
, Eduardo Gamito Teiga
, Monika Hegi
, Andreas Hottinger
, Meritxell Bach Cuadra
, Patric Hagmann
, Jonas Richiardi
:
Diagnostic Surveillance of High-Grade Gliomas: Towards Automated Change Detection Using Radiology Report Classification. PKDD/ECML Workshops (2) 2021: 423-436 - [i4]Tommaso Di Noto, Guillaume Marie, Sébastien Tourbier, Yasser Alemán-Gómez, Oscar Esteban, Guillaume Saliou, Meritxell Bach Cuadra, Patric Hagmann, Jonas Richiardi:
Weak labels and anatomical knowledge: making deep learning practical for intracranial aneurysm detection in TOF-MRA. CoRR abs/2103.06168 (2021) - [i3]Hélène Lajous, Christopher W. Roy, Tom Hilbert, Priscille de Dumast, Sébastien Tourbier, Yasser Alemán-Gómez, Jérôme Yerly, Thomas Yu, Hamza Kebiri, Kelly Payette, Jean-Baptiste Ledoux, Reto Meuli, Patric Hagmann, András Jakab
, Vincent Dunet, Mériam Koob, Tobias Kober, Matthias Stuber, Meritxell Bach Cuadra:
FaBiAN: A Fetal Brain magnetic resonance Acquisition Numerical phantom. CoRR abs/2109.03624 (2021) - 2020
- [j24]Katharina Glomb, Joan Rué Queralt
, David Pascucci
, Michaël Defferrard, Sébastien Tourbier
, Margherita Carboni, Maria Rubega
, Serge Vulliémoz, Gijs Plomp
, Patric Hagmann
:
Connectome spectral analysis to track EEG task dynamics on a subsecond scale. NeuroImage 221: 117137 (2020) - [c10]Tommaso Di Noto
, Guillaume Marie, Sébastien Tourbier
, Yasser Alemán-Gómez
, Guillaume Saliou, Meritxell Bach Cuadra, Patric Hagmann
, Jonas Richiardi
:
An Anatomically-Informed 3D CNN for Brain Aneurysm Classification with Weak Labels. MLCN/RNO-AI@MICCAI 2020: 56-66 - [c9]Hélène Lajous
, Tom Hilbert, Christopher W. Roy, Sébastien Tourbier, Priscille de Dumast, Thomas Yu, Jean-Philippe Thiran
, Jean-Baptiste Ledoux, Davide Piccini, Patric Hagmann, Reto Meuli, Tobias Kober, Matthias Stuber, Ruud B. van Heeswijk
, Meritxell Bach Cuadra
:
T2 Mapping from Super-Resolution-Reconstructed Clinical Fast Spin Echo Magnetic Resonance Acquisitions. MICCAI (2) 2020: 114-124 - [i2]Tommaso Di Noto, Guillaume Marie, Sébastien Tourbier, Yasser Alemán-Gómez, Guillaume Saliou, Meritxell Bach Cuadra, Patric Hagmann, Jonas Richiardi:
An anatomically-informed 3D CNN for brain aneurysm classification with weak labels. CoRR abs/2012.08645 (2020)
2010 – 2019
- 2019
- [j23]Murat Demirtas
, Adrián Ponce-Alvarez
, Matthieu Gilson
, Patric Hagmann, Dante Mantini
, Viviana Betti
, Gian Luca Romani, Karl J. Friston
, Maurizio Corbetta
, Gustavo Deco
:
Distinct modes of functional connectivity induced by movie-watching. NeuroImage 184: 335-348 (2019) - [j22]Andrea Avena-Koenigsberger
, Xiaoran Yan
, Artemy Kolchinsky
, Martijn P. van den Heuvel
, Patric Hagmann, Olaf Sporns
:
A spectrum of routing strategies for brain networks. PLoS Comput. Biol. 15(3) (2019) - [c8]Maria Rubega
, David Pascucci
, Joan Rué Queralt, Pieter van Mierlo, Patric Hagmann, Gijs Plomp, Christoph M. Michel
:
Time-varying effective EEG source connectivity: the optimization of model parameters. EMBC 2019: 6438-6441 - 2018
- [j21]Matthieu Gilson
, Gustavo Deco
, Karl J. Friston
, Patric Hagmann, Dante Mantini
, Viviana Betti
, Gian Luca Romani, Maurizio Corbetta
:
Effective connectivity inferred from fMRI transition dynamics during movie viewing points to a balanced reconfiguration of cortical interactions. NeuroImage 180(Part): 534-546 (2018) - [c7]Magali Fröhlich, Christophe Bolinhas, Adrien Depeursinge
, Antoine Widmer, Nicolas Chevrey, Patric Hagmann, Christian Simon, Vivianne B. C. Kokje, Stéphane Gobron:
Holographic Visualisation and Interaction of Fused CT, PET and MRI Volumetric Medical Imaging Data Using Dedicated Remote GPGPU Ray Casting. POCUS/BIVPCS/CuRIOUS/CPM@MICCAI 2018: 102-110 - 2017
- [j20]Silvana Silva Pereira
, Rikkert Hindriks
, Stefanie Mühlberg
, Eric Maris, Freek van Ede, Alessandra Griffa
, Patric Hagmann, Gustavo Deco
:
Effect of Field Spread on Resting-State Magneto Encephalography Functional Network Analysis: A Computational Modeling Study. Brain Connect. 7(9): 541-557 (2017) - [j19]Sébastien Tourbier
, Clemente Velasco-Annis, Vahid Taimouri, Patric Hagmann, Reto Meuli, Simon K. Warfield
, Meritxell Bach Cuadra
, Ali Gholipour:
Automated template-based brain localization and extraction for fetal brain MRI reconstruction. NeuroImage 155: 460-472 (2017) - [j18]Alessandra Griffa
, Benjamin Ricaud, Kirell Benzi, Xavier Bresson, Alessandro Daducci, Pierre Vandergheynst, Jean-Philippe Thiran
, Patric Hagmann:
Transient networks of spatio-temporal connectivity map communication pathways in brain functional systems. NeuroImage 155: 490-502 (2017) - [i1]Attila Csoma, Attila Korösi, Gábor Rétvári, Zalán Heszberger, József Bíró, Mariann Slíz, Andrea Avena-Koenigsberger, Alessandra Griffa, Patric Hagmann, András Gulyás:
Routes Obey Hierarchy in Complex Networks. CoRR abs/1702.05912 (2017) - 2016
- [j17]Richard F. Betzel, Andrea Avena-Koenigsberger, Joaquín Goñi, Ye He, Marcel A. de Reus, Alessandra Griffa
, Petra E. Vértes
, Bratislav Misic, Jean-Philippe Thiran
, Patric Hagmann, Martijn P. van den Heuvel
, Xi-Nian Zuo, Edward T. Bullmore
, Olaf Sporns
:
Generative models of the human connectome. NeuroImage 124: 1054-1064 (2016) - 2015
- [j16]Djalel Eddine Meskaldji, Lana Vasung, David Romascano, Jean-Philippe Thiran
, Patric Hagmann, Stephan Morgenthaler, Dimitri Van De Ville
:
Improved statistical evaluation of group differences in connectomes by screening-filtering strategy with application to study maturation of brain connections between childhood and adolescence. NeuroImage 108: 251-264 (2015) - [j15]Sébastien Tourbier
, Xavier Bresson, Patric Hagmann, Jean-Philippe Thiran
, Reto Meuli, Meritxell Bach Cuadra:
An efficient total variation algorithm for super-resolution in fetal brain MRI with adaptive regularization. NeuroImage 118: 584-597 (2015) - [j14]Adrián Ponce-Alvarez
, Gustavo Deco
, Patric Hagmann, Gian Luca Romani, Dante Mantini
, Maurizio Corbetta
:
Resting-State Temporal Synchronization Networks Emerge from Connectivity Topology and Heterogeneity. PLoS Comput. Biol. 11(2) (2015) - [j13]Adrián Ponce-Alvarez
, Biyu J. He
, Patric Hagmann, Gustavo Deco
:
Task-Driven Activity Reduces the Cortical Activity Space of the Brain: Experiment and Whole-Brain Modeling. PLoS Comput. Biol. 11(8) (2015) - [c6]Sébastien Tourbier
, Patric Hagmann, Maud Cagneaux, Laurent Guibaud, Subrahmanyam Gorthi
, Marie Schaer
, Jean-Philippe Thiran
, Reto Meuli, Meritxell Bach Cuadra
:
Automatic brain extraction in fetal MRI using multi-atlas-based segmentation. Medical Imaging: Image Processing 2015: 94130Y - 2014
- [j12]Artemy Kolchinsky
, Martijn P. van den Heuvel
, Alessandra Griffa
, Patric Hagmann, Luis M. Rocha
, Olaf Sporns
, Joaquín Goñi:
Multi-scale integration and predictability in resting state brain activity. Frontiers Neuroinformatics 8: 66 (2014) - [c5]Sébastien Tourbier, Xavier Bresson, Patric Hagmann, Jean-Philippe Thiran
, Reto Meuli, Meritxell Bach Cuadra:
Efficient Total Variation Algorithm for Fetal Brain MRI Reconstruction. MICCAI (2) 2014: 252-259 - 2013
- [j11]Djalel Eddine Meskaldji, Elda Fischi Gomez
, Alessandra Griffa
, Patric Hagmann, Stephan Morgenthaler, Jean-Philippe Thiran
:
Comparing connectomes across subjects and populations at different scales. NeuroImage 80: 416-425 (2013) - [j10]Alessandra Griffa
, Philipp S. Baumann, Jean-Philippe Thiran
, Patric Hagmann:
Structural connectomics in brain diseases. NeuroImage 80: 515-526 (2013) - 2012
- [j9]Jonas Richiardi
, Markus Gschwind
, Samanta Simioni, Jean-Marie Annoni, Beatrice Greco, Patric Hagmann, Myriam Schluep, Patrik Vuilleumier
, Dimitri Van De Ville
:
Classifying minimally disabled multiple sclerosis patients from resting state functional connectivity. NeuroImage 62(3): 2021-2033 (2012) - 2011
- [j8]Stephan Gerhard, Alessandro Daducci
, Alia Lemkaddem, Reto Meuli, Jean-Philippe Thiran
, Patric Hagmann:
The Connectome Viewer Toolkit: An Open Source Framework to Manage, Analyze, and Visualize Connectomes. Frontiers Neuroinformatics 5: 3 (2011)
2000 – 2009
- 2009
- [j7]Jeffrey Alstott, Michael Breakspear
, Patric Hagmann, Leila Cammoun, Olaf Sporns
:
Modeling the Impact of Lesions in the Human Brain. PLoS Comput. Biol. 5(6) (2009) - 2008
- [j6]Van J. Wedeen, R. P. Wang, Jeremy D. Schmahmann, Thomas Benner, Wen-Yih Isaac Tseng
, Guangping Dai, Deepak N. Pandya, Patric Hagmann, Helen D'Arceuil, Alex J. de Crespigny:
Diffusion spectrum magnetic resonance imaging (DSI) tractography of crossing fibers. NeuroImage 41(4): 1267-1277 (2008) - 2007
- [j5]Lisa Jonasson, Patric Hagmann, Claudio Pollo, Xavier Bresson, Cecilia Richero Wilson, Reto Meuli, Jean-Philippe Thiran
:
A level set method for segmentation of the thalamus and its nuclei in DT-MRI. Signal Process. 87(2): 309-321 (2007) - [j4]Lisa Jonasson, Xavier Bresson, Jean-Philippe Thiran
, Van J. Wedeen, Patric Hagmann:
Representing Diffusion MRI in 5-D Simplifies Regularization and Segmentation of White Matter Tracts. IEEE Trans. Medical Imaging 26(11): 1547-1554 (2007) - 2006
- [j3]Patric Hagmann, Lisa Jonasson, Thomas Deffieux
, Reto Meuli, Jean-Philippe Thiran
, Van J. Wedeen:
Fibertract segmentation in position orientation space from high angular resolution diffusion MRI. NeuroImage 32(2): 665-675 (2006) - 2005
- [b1]Patric Hagmann:
From diffusion MRI to brain connectomics. EPFL, Switzerland, 2005 - [j2]Lisa Jonasson, Xavier Bresson, Patric Hagmann, Olivier Cuisenaire
, Reto Meuli, Jean-Philippe Thiran
:
White matter fiber tract segmentation in DT-MRI using geometric flows. Medical Image Anal. 9(3): 223-236 (2005) - [c4]Lisa Jonasson, Patric Hagmann, Xavier Bresson, Jean-Philippe Thiran
, Van J. Wedeen:
Representing Diffusion MRI in 5D for Segmentation of White Matter Tracts with a Level Set Method. IPMI 2005: 311-320 - 2003
- [j1]Patric Hagmann, Jean-Philippe Thiran
, Lisa Jonasson, Pierre Vandergheynst
, Stephanie Clarke, Philippe Maeder, Reto Meuli:
DTI mapping of human brain connectivity: statistical fibre tracking and virtual dissection. NeuroImage 19(3): 545-554 (2003) - [c3]Lisa Jonasson, Patric Hagmann, Xavier Bresson, Reto Meuli, Olivier Cuisenaire
, Jean-Philippe Thiran:
White Matter Mapping in DT-MRI Using Geometric Flows. EUROCAST 2003: 585-596 - [c2]Torsten Butz, Patric Hagmann, Eric Tardif, Reto Meuli, Jean-Philippe Thiran
:
A New Brain Segmentation Framework. MICCAI (2) 2003: 586-593 - 2002
- [c1]Meritxell Bach Cuadra, J. Gomez, Patric Hagmann, Claudio Pollo, Jean-Guy Villemure, Benoit M. Dawant, Jean-Philippe Thiran
:
Atlas-Based Segmentation of Pathological Brains Using a Model of Tumor Growth. MICCAI (1) 2002: 380-387
Coauthor Index
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