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2020 – today
- 2024
[i9]Harshad Hegde, Jennifer Vendetti, Damien Goutte-Gattat, J. Harry Caufield, John Graybeal, Nomi L. Harris, Naouel Karam, Christian Kindermann, Nicolas Matentzoglu, James A. Overton, Mark A. Musen, Christopher J. Mungall:
A Change Language for Ontologies and Knowledge Graphs. CoRR abs/2409.13906 (2024)- 2023
- [c18]Clément Jonquet
, John Graybeal, Syphax Bouazzouni, Michael Dorf, Nicola Fiore, Xeni Kechagioglou, Timothy Redmond, Ilaria Rosati, Alex Skrenchuk, Jennifer Vendetti, Mark A. Musen:
Ontology Repositories and Semantic Artefact Catalogues with the OntoPortal Technology. ISWC 2023: 38-58 - 2022
- [j7]Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall:
A Simple Standard for Sharing Ontological Mappings (SSSOM). Database J. Biol. Databases Curation 2022(2022) (2022) - [c17]Nicolas Matentzoglu, Joe E. Flack, John Graybeal, Nomi L. Harris, Harshad B. Hegde, Charles Tapley Hoyt, Hyeongsik Kim, Sabrina Toro, Nicole A. Vasilevsky, Christopher J. Mungall:
A simple standard for ontological mappings 2022: updates of data model and outlook. OM@ISWC 2022: 61-66 - [i8]Mark A. Musen, Martin J. O'Connor, Erik Schultes, Marcos Martínez Romero, Josef Hardi, John Graybeal:
Modeling community standards for metadata as templates makes data FAIR. CoRR abs/2208.02836 (2022) - 2021
- [i7]Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall:
A Simple Standard for Sharing Ontological Mappings (SSSOM). CoRR abs/2112.07051 (2021)
2010 – 2019
- 2019
- [j6]Marcos Martínez Romero, Martin J. O'Connor, Attila L. Egyedi, Debra Willrett, Josef Hardi, John Graybeal, Mark A. Musen:
Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases. Database J. Biol. Databases Curation 2019: baz059 (2019) - [c16]Martin J. O'Connor, Denise B. Warzel, Marcos Martínez Romero, Josef Hardi, Debra Willrett, Aras Efekhari, John Graybeal, Mark A. Musen:
Unleashing the value of Common Data Elements through the CEDAR Workbench. AMIA 2019 - [c15]Li Li, Seyedmohammad Salehi, Chien-Chung Shen, Leonard J. Cimini Jr., John Graybeal:
Multi-Carrier LAA with Adaptive Energy Detection and Carrier Selection. VTC Fall 2019: 1-5 - [i6]Peter Wittenburg, Hana Pergl Sustkova, Annalisa Montesanti, Margreet Bloemers, S. H. de Waard, Mark A. Musen, John Graybeal, Kristina M. Hettne, Annika Jacobsen, Robert Pergl, Rob W. W. Hooft, Christine Staiger, Celia W. G. van Gelder, Sebastiaan L. Knijnenburg, A. C. van Arkel, Bert Meerman, Mark D. Wilkinson, Susanna-Assunta Sansone, Philippe Rocca-Serra, Peter McQuilton, Alejandra N. González-Beltrán, G. J. C. Aben, Patrícia Henning, Maria Simone de Menezes Alencar, C. Ribeiro, C. R. L. Silva, Luís Fernando Sayão, Luana Sales, Viviane Veiga, Jefferson Lima, Simone Dib, Paula Xavier dos Santos, R. Murtinho, Jakob Tendel, B. F. Schaap, P. M. Brouwer, A. K. Gavai, Yamine Bouzembrak, Hans J. P. Marvin, Albert Mons, Tobias Kuhn, Alessa A. Gambardella, Ricardo de Miranda Azevedo, Vesa Muhonen, Mira van der Naald, N. W. Smit, M. J. Buys, Taco F. de Bruin, Fieke Schoots, H. J. E. Goodson, Henry S. Rzepa, Keith G. Jeffery, Hugh P. Shanahan, M. Axton, Veniamin Tkachenko, Anne Deslattes Mays, Natalie Meyers, Michael Conlon, Laurel L. Haak, Erik A. Schultes:
The FAIR Funder pilot programme to make it easy for funders to require and for grantees to produce FAIR Data. CoRR abs/1902.11162 (2019) - [i5]Marcos Martínez Romero, Martin J. O'Connor, Attila L. Egyedi, Debra Willrett, Josef Hardi, John Graybeal, Mark A. Musen:
Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases. CoRR abs/1903.09270 (2019) - [i4]Rafael S. Gonçalves, Martin J. O'Connor, Marcos Martínez Romero, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen:
The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments. CoRR abs/1905.06480 (2019) - 2018
- [j5]Syed Ahmad Chan Bukhari, Marcos Martínez Romero, Martin J. O'Connor, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen, Kei-Hoi Cheung, Steven H. Kleinstein:
CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata. BMC Bioinform. 19(1): 268:1-268:6 (2018) - [j4]Clément Jonquet, Anne Toulet, Elizabeth Arnaud, Sophie Aubin, Esther Dzalé Yeumo Kaboré, Vincent Emonet, John Graybeal, Marie-Angélique Laporte, Mark A. Musen, Valeria Pesce, Pierre Larmande:
AgroPortal: A vocabulary and ontology repository for agronomy. Comput. Electron. Agric. 144: 126-143 (2018) - [c14]Rafael S. Gonçalves, Csongor I. Nyulas, Marcos Martínez Romero, Martin J. O'Connor, John Graybeal, Mark A. Musen:
Using Ontologies to Drive the Creation of High-Quality Metadata in CEDAR. ISWC (P&D/Industry/BlueSky) 2018 - [c13]Attila L. Egyedi, Martin J. O'Connor, Marcos Martínez Romero, Debra Willrett, Josef Hardi, John Graybeal, Mark A. Musen:
Using semantic technologies to enhance metadata submissions to public repositories in biomedicine. SWAT4LS 2018 - [c12]Seyedmohammad Salehi, Li Li, Chien-Chung Shen, Leonard J. Cimini Jr., John Graybeal:
Traffic Differentiation in Dense WLANs with CSMA/ECA-DR MAC Protocol. VTC Fall 2018: 1-5 - [c11]Mark A. Musen, Susanna-Assunta Sansone, Kei-Hoi Cheung, Steven H. Kleinstein, Morgan Crafts, Stephan C. Schürer, John Graybeal:
CEDAR: Semantic Web Technology to Support Open Science. WWW (Companion Volume) 2018: 427-428 - [i3]Seyedmohammad Salehi, Li Li, Chien-Chung Shen, Leonard J. Cimini Jr., John Graybeal:
Traffic Differentiation in Dense WLANs with CSMA/ECA-DR MAC Protocol. CoRR abs/1806.09582 (2018) - 2017
- [j3]Marcos Martínez Romero, Clément Jonquet, Martin J. O'Connor, John Graybeal, Alejandro Pazos, Mark A. Musen:
NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation. J. Biomed. Semant. 8(1): 21:1-21:22 (2017) - [c10]Marcos Martínez Romero, Martin J. O'Connor, Ravi D. Shankar, Maryam Panahiazar, Debra Willrett, Attila Levente Egyedi, Olivier Gevaert, John Graybeal, Mark A. Musen:
Fast and Accurate Metadata Authoring Using Ontology-Based Recommendations. AMIA 2017 - [c9]Marcos Martínez Romero, Martin J. O'Connor, Michael Dorf, Jennifer Vendetti, Debra Willrett, Attila L. Egyedi, John Graybeal, Mark A. Musen:
Supporting Ontology-Based Standardization of Biomedical Metadata in the CEDAR Workbench. ICBO 2017 - [c8]Rafael S. Gonçalves, Martin J. O'Connor, Marcos Martínez Romero, John Graybeal, Mark A. Musen:
Metadata in the BioSample Online Repository are Impaired by Numerous Anomalies. SemSci@ISWC 2017: 39-46 - [c7]Rafael S. Gonçalves, Martin J. O'Connor, Marcos Martínez Romero, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen:
The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments. ISWC (2) 2017: 103-110 - [c6]Attila L. Egyedi, Martin J. O'Connor, Marcos Martínez Romero, Debra Willrett, Josef Hardi, John Graybeal, Mark A. Musen:
Embracing Semantic Technology for Better Metadata Authoring in Biomedicine. SWAT4LS 2017 - [i2]Rafael S. Gonçalves, Martin J. O'Connor, Marcos Martínez Romero, John Graybeal, Mark A. Musen:
Metadata in the BioSample Online Repository are Impaired by Numerous Anomalies. CoRR abs/1708.01286 (2017) - 2016
- [c5]Mark A. Musen, Martin J. O'Connor, Marcos Martínez Romero, Attila Levente Egyedi, Debra Willrett, John Graybeal:
CEDAR: Better Data Sharing Through the Authoring of Better Metadata. AMIA 2016 - [c4]Martin J. O'Connor, Marcos Martínez Romero, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen:
An Open Repository Model for Acquiring Knowledge About Scientific Experiments. EKAW 2016: 762-777 - [c3]Clément Jonquet, Anne Toulet, Elizabeth Arnaud, Sophie Aubin, Esther Dzalé Yeumo Kaboré, Vincent Emonet, John Graybeal, Mark A. Musen, Cyril Pommier, Pierre Larmande:
Reusing the NCBO BioPortal Technology for Agronomy to Build AgroPortal. ICBO/BioCreative 2016 - [i1]Marcos Martínez Romero, Clément Jonquet, Martin J. O'Connor, John Graybeal, Alejandro Pazos, Mark A. Musen:
NCBO Ontology Recommender 2.0: An Enhanced Approach for Biomedical Ontology Recommendation. CoRR abs/1611.05973 (2016) - 2012
- [j2]John Graybeal, Anthony W. Isenor, Carlos Rueda:
Semantic mediation of vocabularies for ocean observing systems. Comput. Geosci. 40: 120-131 (2012) - [j1]Michael Compton, Payam M. Barnaghi, Luis Bermudez, Raul Garcia-Castro, Óscar Corcho, Simon J. D. Cox, John Graybeal, Manfred Hauswirth, Cory A. Henson, Arthur Herzog, Vincent A. Huang, Krzysztof Janowicz, W. David Kelsey, Danh Le Phuoc, Laurent Lefort, Myriam Leggieri, Holger Neuhaus, Andriy Nikolov, Kevin R. Page, Alexandre Passant, Amit P. Sheth, Kerry Taylor:
The SSN ontology of the W3C semantic sensor network incubator group. J. Web Semant. 17: 25-32 (2012)
2000 – 2009
- 2009
- [c2]Luis Bermudez, Tony Cook, David Forest, Philip Bogden, Charlton Galvarino, John Graybeal, Eric Bridger, Gerry Creager:
Web feature service (WFS) and sensor observation service (SOS) comparison to publish time series data. CTS 2009: 36-43 - 2008
- [c1]Randal Butler, Terry Fleury, Von Welch, John Graybeal, Duane Edgington, Kevin Gomes, Bob Herlien:
Observatory Middleware Framework. eScience 2008: 366-367
Coauthor Index
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