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Yuko Makita
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2010 – 2019
- 2013
- [j11]Yuko Makita
, Norio Kobayashi, Yuko Yoshida, Koji Doi, Yoshiki Mochizuki, Koro Nishikata, Akihiro Matsushima, Satoshi Takahashi, Manabu Ishii, Terue Takatsuki, Rinki Bhatia, Zolzaya Khadbaatar, Hajime Watabe, Hiroshi Masuya, Tetsuro Toyoda:
PosMed: ranking genes and bioresources based on Semantic Web Association Study. Nucleic Acids Res. 41(Webserver-Issue): 109-114 (2013) - [j10]Robert Sidney Cox III, Koro Nishikata, Sayoko Shimoyama, Yuko Yoshida, Minami Matsui, Yuko Makita
, Tetsuro Toyoda:
PromoterCAD: data-driven design of plant regulatory DNA. Nucleic Acids Res. 41(Webserver-Issue): 569-574 (2013) - [c5]Norio Kobayashi, Yuko Makita, Manabu Ishii, Akihiro Matsushima, Yoshiki Mochizuki, Koji Doi, Koro Nishikata, David Gifford, Terue Takatsuki, Hiroshi Masuya, Tetsuro Toyoda:
PosMed: A Biomedical Entity Prioritisation Tool Based on Statistical Inference over Literature and the Semantic Web. SWAT4LS 2013 - 2012
- [c4]Hiroshi Masuya, Terue Takatsuki, Yuko Makita, Yuko Yoshida, Yoshiki Mochizuki, Norio Kobayashi, Atsushi Yoshiki, Yukio Nakamura, Tetsuro Toyoda, Yuichi Obata:
Development of Linked Open Data for Bioresources. JIST 2012: 350-355 - 2011
- [j9]Hiroshi Masuya, Yuko Makita
, Norio Kobayashi, Koro Nishikata, Yuko Yoshida, Yoshiki Mochizuki, Koji Doi, Terue Takatsuki, Kazunori Waki
, Nobuhiko Tanaka
, Manabu Ishii, Akihiro Matsushima, Satoshi Takahashi, Atsushi Hijikata
, Kouji Kozaki, Teiichi Furuichi
, Hideya Kawaji
, Shigeharu Wakana, Yukio Nakamura, Atsushi Yoshiki
, Takehide Murata, Kaoru Fukami-Kobayashi, S. Sujatha Mohan, Osamu Ohara
, Yoshihide Hayashizaki, Riichiro Mizoguchi, Yuichi Obata, Tetsuro Toyoda:
The RIKEN integrated database of mammals. Nucleic Acids Res. 39(Database-Issue): 861-870 (2011)
2000 – 2009
- 2009
- [j8]K. Rao Raghuraj, Kyaw Tun, Yuko Makita, Samavedham Lakshminarayanan
, Pawan K. Dhar:
Amino-Acid Residue Association Models for Large Scale Protein-Protein Interaction Prediction. Silico Biol. 9(4): 179-194 (2009) - [j7]Akihiro Matsushima, Norio Kobayashi, Yoshiki Mochizuki, Manabu Ishii, Shuji Kawaguchi, Takaho A. Endo, Ryo Umetsu, Yuko Makita
, Tetsuro Toyoda:
OmicBrowse: a Flash-based high-performance graphics interface for genomic resources. Nucleic Acids Res. 37(Web-Server-Issue): 57-62 (2009) - [j6]Yuko Yoshida, Yuko Makita
, Naohiko Heida, Satomi Asano, Akihiro Matsushima, Manabu Ishii, Yoshiki Mochizuki, Hiroshi Masuya, Shigeharu Wakana, Norio Kobayashi, Tetsuro Toyoda:
PosMed (Positional Medline): prioritizing genes with an artificial neural network comprising medical documents to accelerate positional cloning. Nucleic Acids Res. 37(Web-Server-Issue): 147-152 (2009) - 2008
- [j5]Nicolas Sierro, Yuko Makita, Michiel J. L. de Hoon
, Kenta Nakai:
DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic Acids Res. 36(Database-Issue): 93-96 (2008) - [c3]Norio Kobayashi, Yuko Makita, Eli Kaminuma, Shuji Kawaguchi, Yuko Yoshida, Yoshiki Mochizuki, Akihiro Matsushima, Manabu Ishii, Ryo Umetsu, Satomi Asano, Naohiko Heida, Tetsuya Sakurai, Takashi Kuromori, Kazuo Shinozaki, Tetsuro Toyoda:
A Secure Data Repository Integrating Huge Volumes of Digital Contents as a Semantic Web. SWAT4LS 2008 - 2007
- [j4]Yuko Makita, Michiel J. L. de Hoon
, Antoine Danchin
:
Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes. BMC Bioinform. 8 (2007) - [j3]Toshiyuki Okumura, Hiroki Makiguchi, Yuko Makita
, Riu Yamashita, Kenta Nakai:
Melina II: a web tool for comparisons among several predictive algorithms to find potential motifs from promoter regions. Nucleic Acids Res. 35(Web-Server-Issue): 227-231 (2007) - 2005
- [j2]Michiel J. L. de Hoon, Yuko Makita, Kenta Nakai, Satoru Miyano
:
Prediction of Transcriptional Terminators in Bacillus subtilis and Related Species. PLoS Comput. Biol. 1(3) (2005) - [c2]Yuko Makita, Michiel J. L. de Hoon, Naotake Ogasawara, Satoru Miyano, Kenta Nakai:
Bayesian Joint Prediction of Associated Transcription Factors in Bacillus subtilis. Pacific Symposium on Biocomputing 2005 - 2004
- [j1]Yuko Makita, Mitsuteru Nakao, Naotake Ogasawara, Kenta Nakai:
BTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics. Nucleic Acids Res. 32(Database-Issue): 75-77 (2004) - [c1]Michiel J. L. de Hoon
, Yuko Makita
, Seiya Imoto, Kazuo Kobayashi, Naotake Ogasawara, Kenta Nakai, Satoru Miyano
:
Predicting gene regulation by sigma factors in Bacillus subtilis from genome-wide data. ISMB/ECCB (Supplement of Bioinformatics) 2004: 101-108
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