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ORCIDHeike Siebert
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- affiliation: Free University of Berlin, Germany
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2020 – today
- 2024
[c20]Maryam Yousefian
, Elisa Tonello, Anna-Simone Frank, Heike Siebert, Susanna Röblitz:
Uncovering Dynamic Structures Within Cyclic Attractors of Asynchronous Boolean Networks with Spectral Clustering. CMSB 2024: 226-246- 2022
- [j15]Robert Schwieger, Heike Siebert:
Structure and behavior in Boolean monotonic model pools. Biosyst. 214: 104610 (2022) - [j14]Laura Cifuentes Fontanals, Elisa Tonello, Heike Siebert:
Control in Boolean Networks With Model Checking. Frontiers Appl. Math. Stat. 8: 838546 (2022) - 2020
- [j13]Hannes Klarner, Frederike Heinitz, Sarah Nee, Heike Siebert:
Basins of Attraction, Commitment Sets, and Phenotypes of Boolean Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 17(4): 1115-1124 (2020) - [c19]Laura Cifuentes Fontanals, Elisa Tonello, Heike Siebert:
Control Strategy Identification via Trap Spaces in Boolean Networks. CMSB 2020: 159-175 - [c18]Robert Schwieger, Matías R. Bender, Heike Siebert, Christian Haase:
Classifier Construction in Boolean Networks Using Algebraic Methods. CMSB 2020: 210-233
2010 – 2019
- 2019
- [j12]Denise Thiel, Natasa Djurdjevac Conrad, Evgenia Ntini, Ria X. Peschutter, Heike Siebert, Annalisa Marsico:
Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis. BMC Bioinform. 20(1): 292:1-292:16 (2019) - [c17]Melania Nowicka, Heike Siebert:
Designing Distributed Cell Classifier Circuits Using a Genetic Algorithm. CMSB 2019: 96-119 - [i3]Elisa Tonello, Heike Siebert:
Boolean analysis of lateral inhibition. CoRR abs/1904.02544 (2019) - 2018
- [j11]Hannes Klarner, Alexander Bockmayr, Heike Siebert:
Erratum to: Computing maximal and minimal trap spaces of Boolean networks. Nat. Comput. 17(2): 437 (2018) - [j10]Robert Schwieger, Heike Siebert, Susanna Röblitz:
Correspondence of Trap Spaces in Different Models of Bioregulatory Networks. SIAM J. Appl. Dyn. Syst. 17(2): 1742-1765 (2018) - 2017
- [j9]Hannes Klarner, Adam Streck, Heike Siebert:
PyBoolNet: a python package for the generation, analysis and visualization of boolean networks. Bioinform. 33(5): 770-772 (2017) - [c16]Robert Schwieger, Heike Siebert:
Graph Representations of Monotonic Boolean Model Pools. CMSB 2017: 233-248 - 2016
- [j8]Adam Streck, Kirsten Thobe, Heike Siebert:
Data-driven optimizations for model checking of multi-valued regulatory networks. Biosyst. 149: 125-138 (2016) - 2015
- [j7]Kaveh Yousef, Adam Streck, Christof Schütte, Heike Siebert, Regine Hengge, Max von Kleist:
Logical-continuous modelling of post-translationally regulated bistability of curli fiber expression in Escherichia coli. BMC Syst. Biol. 9: 39 (2015) - [j6]Hannes Klarner, Alexander Bockmayr, Heike Siebert:
Computing maximal and minimal trap spaces of Boolean networks. Nat. Comput. 14(4): 535-544 (2015) - [j5]Adam Streck, Therese Lorenz, Heike Siebert:
Minimization and equivalence in multi-valued logical models of regulatory networks. Nat. Comput. 14(4): 555-566 (2015) - [c15]Adam Streck, Kirsten Thobe, Heike Siebert:
Analysing Cell Line Specific EGFR Signalling via Optimized Automata Based Model Checking. CMSB 2015: 264-276 - [c14]Adam Streck, Kirsten Thobe, Heike Siebert:
Comparative Statistical Analysis of Qualitative Parametrization Sets. HSB 2015: 20-34 - 2014
- [c13]Hannes Klarner, Alexander Bockmayr, Heike Siebert:
Computing Symbolic Steady States of Boolean Networks. ACRI 2014: 561-570 - [c12]Adam Streck, Heike Siebert:
Equivalences in Multi-valued Asynchronous Models of Regulatory Networks. ACRI 2014: 571-575 - [c11]Kirsten Thobe, Adam Streck, Hannes Klarner, Heike Siebert:
Model Integration and Crosstalk Analysis of Logical Regulatory Networks. CMSB 2014: 32-44 - 2013
- [j4]Shahrad Jamshidi, Heike Siebert, Alexander Bockmayr:
Preservation of dynamic properties in qualitative modeling frameworks for gene regulatory networks. Biosyst. 112(2): 171-179 (2013) - [c10]Alexander Bockmayr, Heike Siebert:
Bio-Logics: Logical Analysis of Bioregulatory Networks. Programming Logics 2013: 19-34 - 2012
- [j3]Hannes Klarner, Heike Siebert, Alexander Bockmayr:
Time Series Dependent Analysis of Unparametrized Thomas Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 9(5): 1338-1351 (2012) - [c9]Hannes Klarner, Adam Streck, David Safránek, Juraj Kolcák, Heike Siebert:
Parameter Identification and Model Ranking of Thomas Networks. CMSB 2012: 207-226 - [c8]Shahrad Jamshidi, Heike Siebert, Alexander Bockmayr:
Comparing Discrete and Piecewise Affine Differential Equation Models of Gene Regulatory Networks. IPCAT 2012: 17-24 - 2011
- [c7]Hannes Klarner, Heike Siebert, Alexander Bockmayr:
Parameter inference for asynchronous logical networks using discrete time series. CMSB 2011: 121-130 - 2010
- [c6]Sven Twardziok, Heike Siebert, Alexander Heyl:
Stochasticity in reactions: a probabilistic Boolean modeling approach. CMSB 2010: 76-85
2000 – 2009
- 2009
- [j2]Heike Siebert:
Deriving Behavior of Boolean Bioregulatory Networks from Subnetwork Dynamics. Math. Comput. Sci. 2(3): 421-442 (2009) - [c5]Heike Siebert:
Dynamical and Structural Modularity of Discrete Regulatory Networks. COMPMOD 2009: 109-124 - [i2]Attila Csikász-Nagy, Adrien Fauré, Roberto Larcher, Paola Lecca, Ivan Mura, Ferenc Jordán, Alida Palmisano, Alessandro Romanel, Sean Sedwards, Heike Siebert, Sylvain Soliman, Denis Thieffry, Judit Zámborszky, Tommaso Mazza, Paolo Ballarini:
Analyzing various models of Circadian Clock and Cell Cycle coupling. Formal Methods in Molecular Biology 2009 - [i1]Heike Siebert:
Symbolic Steady States and Dynamically Essential Subnetworks of Discrete Regulatory Networks. Formal Methods in Molecular Biology 2009 - 2008
- [j1]Heike Siebert, Alexander Bockmayr:
Temporal constraints in the logical analysis of regulatory networks. Theor. Comput. Sci. 391(3): 258-275 (2008) - [c4]Heike Siebert:
Local Structure and Behavior of Boolean Bioregulatory Networks. AB 2008: 185-199 - 2007
- [c3]Heike Siebert, Alexander Bockmayr:
Relating Attractors and Singular Steady States in the Logical Analysis of Bioregulatory Networks. AB 2007: 36-50 - [c2]Heike Siebert, Alexander Bockmayr:
Context Sensitivity in Logical Modeling with Time Delays. CMSB 2007: 64-79 - 2006
- [c1]Heike Siebert, Alexander Bockmayr:
Incorporating Time Delays into the Logical Analysis of Gene Regulatory Networks. CMSB 2006: 169-183
Coauthor Index
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