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Yasushi Ishihama
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2020 – today
- 2023
- [j11]Eric W. Deutsch, Nuno Bandeira, Yasset Pérez-Riverol
, Vagisha Sharma, Jeremy Carver, Luis Mendoza, Deepti Jaiswal Kundu, Shengbo Wang, Chakradhar Bandla, Selvakumar Kamatchinathan, Suresh Hewapathirana
, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda
, Yu Watanabe, Brendan MacLean, Michael J. MacCoss, Yunping Zhu
, Yasushi Ishihama, Juan Antonio Vizcaíno
:
The ProteomeXchange consortium at 10 years: 2023 update. Nucleic Acids Res. 51(D1): 1539-1548 (2023) - 2021
- [j10]Yu Watanabe, Kiyoko F. Aoki-Kinoshita
, Yasushi Ishihama
, Shujiro Okuda
:
GlycoPOST realizes FAIR principles for glycomics mass spectrometry data. Nucleic Acids Res. 49(Database-Issue): D1523-D1528 (2021) - 2020
- [j9]Eric W. Deutsch, Nuno Bandeira, Vagisha Sharma, Yasset Pérez-Riverol
, Jeremy Carver, Deepti Jaiswal Kundu, David García-Seisdedos
, Andrew F. Jarnuczak, Suresh Hewapathirana
, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano
, Shujiro Okuda, Yu Watanabe, Henning Hermjakob
, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno
:
The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics. Nucleic Acids Res. 48(Database-Issue): D1145-D1152 (2020)
2010 – 2019
- 2019
- [j8]Yuki Moriya, Shin Kawano, Shujiro Okuda, Yu Watanabe, Masaki Matsumoto
, Tomoyo Takami, Daiki Kobayashi
, Yoshinori Yamanouchi, Norie Araki, Akiyasu C. Yoshizawa, Tsuyoshi Tabata, Mio Iwasaki
, Naoyuki Sugiyama
, Satoshi Tanaka, Susumu Goto, Yasushi Ishihama:
The jPOST environment: an integrated proteomics data repository and database. Nucleic Acids Res. 47(Database-Issue): D1218-D1224 (2019) - 2017
- [j7]Eric W. Deutsch, Attila Csordas, Zhi Sun, Andrew F. Jarnuczak
, Yasset Pérez-Riverol
, Tobias Ternent
, David S. Campbell, Manuel Bernal Llinares
, Shujiro Okuda, Shin Kawano
, Robert L. Moritz, Jeremy Carver, Mingxun Wang, Yasushi Ishihama, Nuno Bandeira, Henning Hermjakob
, Juan Antonio Vizcaíno
:
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition. Nucleic Acids Res. 45(Database-Issue): D1100-D1106 (2017) - [j6]Shujiro Okuda, Yu Watanabe, Yuki Moriya
, Shin Kawano
, Tadashi Yamamoto, Masaki Matsumoto
, Tomoyo Takami, Daiki Kobayashi
, Norie Araki, Akiyasu C. Yoshizawa, Tsuyoshi Tabata, Naoyuki Sugiyama
, Susumu Goto, Yasushi Ishihama:
jPOSTrepo: an international standard data repository for proteomes. Nucleic Acids Res. 45(Database-Issue): D1107-D1111 (2017) - 2015
- [j5]Christopher J. Mitchell, Derese Getnet, Min Sik Kim
, Srinivas Manda Srikanth
, Praveen Kumar, Tai-Chung Huang
, Sneha M. Pinto
, Nirujogi Raja Sekhar, Mio Iwasaki
, Patrick G. Shaw, Xinyan Wu, Jun Zhong
, Raghothama Chaerkady, Arivusudar Marimuthu, Babylakshmi Muthusamy, Nandini A. Sahasrabuddhe, Rajesh Raju
, Caitlyn Bowman, Ludmila V. Danilova, Jevon Cutler, Dhanashree S. Kelkar, Charles G. Drake, T. S. Keshava Prasad
, Luigi Marchionni
, Peter N. Murakami, Alan F. Scott, Leming Shi, Jean Thierry-Mieg
, Danielle Thierry-Mieg
, Rafael A. Irizarry, Leslie Cope, Yasushi Ishihama, Charles Wang, Harsha Gowda, Akhilesh Pandey
:
A multi-omic analysis of human naïve CD4+ T cells. BMC Syst. Biol. 9: 75 (2015) - 2011
- [j4]Nozomu Yachie, Rintaro Saito, Naoyuki Sugiyama
, Masaru Tomita, Yasushi Ishihama:
Integrative Features of the Yeast Phosphoproteome and Protein-Protein Interaction Map. PLoS Comput. Biol. 7(1) (2011) - 2010
- [j3]Kosaku Shinoda
, Masaru Tomita, Yasushi Ishihama:
emPAI Calc - for the estimation of protein abundance from large-scale identification data by liquid chromatography-tandem mass spectrometry. Bioinform. 26(4): 576-577 (2010) - [j2]Haruna Imamura, Nozomu Yachie, Rintaro Saito, Yasushi Ishihama, Masaru Tomita:
Towards the systematic discovery of signal transduction networks using phosphorylation dynamics data. BMC Bioinform. 11: 232 (2010)
2000 – 2009
- 2008
- [j1]Kosaku Shinoda
, Masaru Tomita, Yasushi Ishihama:
Aligning LC peaks by converting gradient retention times to retention index of peptides in proteomic experiments. Bioinform. 24(14): 1590-1595 (2008)
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