Location via proxy:   [ UP ]  
[Report a bug]   [Manage cookies]                
  • Ghurye J, Treangen T, Fedarko M, Hervey W and Pop M. (2019). MetaCarvel: linking assembly graph motifs to biological variants. Genome Biology. 10.1186/s13059-019-1791-3. 20:1. Online publication date: 1-Dec-2019.

    https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1791-3

  • Simpson J and Pop M. (2015). The Theory and Practice of Genome Sequence Assembly. Annual Review of Genomics and Human Genetics. 10.1146/annurev-genom-090314-050032. 16:1. (153-172). Online publication date: 24-Aug-2015.

    http://www.annualreviews.org/doi/10.1146/annurev-genom-090314-050032

  • Koren S, Treangen T and Pop M. (2011). Bambus 2. Bioinformatics. 27:21. (2964-2971). Online publication date: 1-Nov-2011.

    https://doi.org/10.1093/bioinformatics/btr520

  • Nagarajan N and Pop M. (2009). Parametric Complexity of Sequence Assembly: Theory and Applications to Next Generation Sequencing. Journal of Computational Biology. 10.1089/cmb.2009.0005. 16:7. (897-908). Online publication date: 1-Jul-2009.

    http://www.liebertpub.com/doi/10.1089/cmb.2009.0005

  • Bartels D, Kespohl S, Albaum S, Drüke T, Goesmann A, Herold J, Kaiser O, Pühler A, Pfeiffer F, Raddatz G, Stoye J, Meyer F and Schuster S. (2005). BACCardI---a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics. 21:7. (853-859). Online publication date: 1-Apr-2005.

    https://doi.org/10.1093/bioinformatics/bti091

  • Pop M, Kosack D and Salzberg S. (2004). Hierarchical Scaffolding With Bambus. Genome Research. 10.1101/gr.1536204. 14:1. (149-159). Online publication date: 1-Jan-2004.

    http://genome.cshlp.org/lookup/doi/10.1101/gr.1536204

  • Ben-Dor A, Karp R, Schwikowski B and Shamir R. (2003). The Restriction Scaffold Problem. Journal of Computational Biology. 10.1089/10665270360688084. 10:3-4. (385-398). Online publication date: 1-Jun-2003.

    http://www.liebertpub.com/doi/10.1089/10665270360688084

  • (2003). A Protein Sequence Prediction Method by Mining Sequence Data. The KIPS Transactions:PartD. 10.3745/KIPSTD.2003.10D.2.261. 10D:2. (261-266). Online publication date: 1-Apr-2003.

    http://koreascience.or.kr/journal/view.jsp?kj=JBCRGX&py=2003&vnc=v10Dn2&sp=261

  • Pop M, Salzberg S and Shumway M. (2002). Genome Sequence Assembly. Computer. 35:7. (47-54). Online publication date: 1-Jul-2002.

    https://doi.org/10.1109/MC.2002.1016901

  • Turner R, Chaturvedi K, Edwards N, Fasulo D, Halpern A, Huson D, Kohlbacher O, Miller J, Reinert K, Remington K, Schwartz R, Walenz B, Yooseph S and Istrail S. Visualization challenges for a new cyberpharmaceutical computing paradigm. Proceedings of the IEEE 2001 symposium on parallel and large-data visualization and graphics. (7-18).

    /doi/10.5555/502125.502127

  • Turner R, Chaturvedi K, Edwards N, Fasulo D, Halpern A, Huson D, Kohlbacher O, Miller J, Reinert K, Remington K, Schwartz R, Walenz B, Yooseph S and Istrail S. Visualization challenges for a new cyber-pharmaceutical computing paradigm IEEE 2001 Symposium on Parallel and Large-Data Visualization and Graphics. 10.1109/PVGS.2001.964398. 0-7803-7223-9. (7-145).

    http://ieeexplore.ieee.org/document/964398/