Export Citations
Save this search
Please login to be able to save your searches and receive alerts for new content matching your search criteria.
- short-paperJuly 2024
freeCount: A Coding Free Framework for Guided Count Data Visualization and Analysis
PEARC '24: Practice and Experience in Advanced Research Computing 2024: Human Powered ComputingArticle No.: 37, Pages 1–4https://doi.org/10.1145/3626203.3670605The analysis and interpretation of high-dimensional biological data sets is a challenging task. Exploratory data analysis of count data produced by next-generation sequencing technologies presents a common hurdle to researchers. Biologists often find it ...
- research-articleJuly 2024
Design Thinking for Human Centric Research Data Systems Engineering
PEARC '24: Practice and Experience in Advanced Research Computing 2024: Human Powered ComputingArticle No.: 21, Pages 1–7https://doi.org/10.1145/3626203.3670542Design thinking research has emphasized the collaborative and iterative nature of design thinking, grounded in user empathy. In addition to divergent and convergent thinking, ethnographic interviewing enables a full landscape of a user’s holistic needs ...
- posterSeptember 2023
Broadening Student Engagement To Build the Next Generation of Cyberinfrastructure Professionals
- Angela Murillo,
- Don Brower,
- Sarowar Hossain,
- Kerk Kee,
- Anirban Mandal,
- Jarek Nabrzyski,
- Erik Scott,
- Nicole Virdone,
- Rodney Ewing,
- Ewa Deelman
PEARC '23: Practice and Experience in Advanced Research Computing 2023: Computing for the Common GoodPages 470–473https://doi.org/10.1145/3569951.3597567The CI Compass Fellowship Program (CICF) was developed to broaden undergraduate student participation in cyberinfrastructure (CI) research, development, and operations. CICF is a distinctive program for undergraduate students pursuing studies in computer ...
- extended-abstractJuly 2022
- research-articleJuly 2021
A Vision for Science Gateways: Bridging the Gap and Broadening the Outreach
- Sandra Gesing,
- Steven Brandt,
- Shannon Bradley,
- Mark Potkewitz,
- Kerk Kee,
- Noreen Whysel,
- Mark Perri,
- Sean Cleveland,
- Annelie Rugg,
- Jack Smith
PEARC '21: Practice and Experience in Advanced Research Computing 2021: Evolution Across All DimensionsArticle No.: 1, Pages 1–8https://doi.org/10.1145/3437359.3465579The future for science gateways warrants exploration as we consider the possibilities that extend well beyond ’science’ and high-performance computing into new interfaces, applications and user communities. In this paper, we look retrospectively at the ...
- research-articleJuly 2021
An Evaluation of Cyberinfrastructure Facilitators Skills Training in the Virtual Residency Program
- Henry Neeman,
- Lorna Rivera,
- Lizanne DeStefano,
- Hussein Al-Azzawi,
- Dana Brunson,
- Patrick Clemins,
- Dirk Colbry,
- Calvin Frye,
- Sandra Gesing,
- Joshua Gyllinsky,
- Anna Klimaszewski-Patterson,
- Anchalee Phataralaoha,
- Todd Price,
- Mohammed Tanash,
- Daniel Voss
PEARC '21: Practice and Experience in Advanced Research Computing 2021: Evolution Across All DimensionsArticle No.: 53, Pages 1–7https://doi.org/10.1145/3437359.3465560Cyberinfrastructure (CI) Facilitation amplifies the productivity of researchers engaged in computing-intensive and data-intensive investigations. CI Facilitators help researchers to adapt their workflows to CI resources, and teaches these researchers how ...
- short-paperJuly 2020
SGCI Incubator and its Role in Workforce Development: Lessons Learned from Training, Consultancy, and Building a Community of Community-Builders for Science Gateways
PEARC '20: Practice and Experience in Advanced Research Computing 2020: Catch the WavePages 491–494https://doi.org/10.1145/3311790.3400850Workforce development is an important topic in distributed computing. While traditional curricula in engineering and computer science focus primarily on disciplinary technical expertise, facilitating research cyberinfrastructures requires a diverse set ...
- research-articleJuly 2020
NLP Workflows for Computational Social Science: Understanding Triggers of State-Led Mass Killings
- Timothy Burley,
- Lorissa Humble,
- Charles Sleeper,
- Abigail Sticha,
- Angela Chesler,
- Patrick Regan,
- Ernesto Verdeja,
- Paul Brenner
PEARC '20: Practice and Experience in Advanced Research Computing 2020: Catch the WavePages 152–159https://doi.org/10.1145/3311790.3397343We leverage statistical and natural language processing (NLP) tools for a systematic analysis of triggers of state-led mass killings. The work advances the application of statistics and NLP in the social sciences and also contributes to scholarly efforts ...
- research-articleJuly 2020
Log Discovery for Troubleshooting Open Distributed Systems with TLQ
PEARC '20: Practice and Experience in Advanced Research Computing 2020: Catch the WavePages 224–231https://doi.org/10.1145/3311790.3396633Troubleshooting a distributed system can be incredibly difficult. It is rarely feasible to expect a user to know the fine-grained interactions between their system and the environment configuration of each machine used in the system. Because of this, ...
- research-articleJuly 2020
Cyberinfrastructure Facilitation Skills Training via the Virtual Residency Program
- Henry Neeman,
- David Akin,
- Hussein Al-Azzawi,
- Kevin L. Brandt,
- Jamene Brooks Kieffer,
- Dana Brunson,
- Dirk Colbry,
- Sandra Gesing,
- Anna Klimaszewski-Patterson,
- Claire Mizumoto,
- Joy A. Pine-Thomas,
- Anita Z. Schwartz,
- Horst Severini,
- Mohammed Tanash,
- Daniel Voss
PEARC '20: Practice and Experience in Advanced Research Computing 2020: Catch the WavePages 421–428https://doi.org/10.1145/3311790.3396629Cyberinfrastructure (CI) Facilitation is the process of helping researchers to use research computing systems and services to advance their computing/data-intensive research goals. The growing need for CI Facilitation isn’t being met by traditional ...
- research-articleJuly 2019
Flexible Partitioning of Scientific Workflows Using the JX Workflow Language
PEARC '19: Practice and Experience in Advanced Research Computing 2019: Rise of the Machines (learning)Article No.: 103, Pages 1–8https://doi.org/10.1145/3332186.3338100Scientific workflows are typically expressed as a graph of logical tasks, each one representing a single program along with its input and output files. A conventional workflow manager transforms each logical task into a discrete batch job and submits it ...
- extended-abstractJuly 2019
The Distant Reader: Tool for Reading
PEARC '19: Practice and Experience in Advanced Research Computing 2019: Rise of the Machines (learning)Article No.: 124, Pages 1–4https://doi.org/10.1145/3332186.3333260The Distant Reader science gateway can be used to automatically create and analyze text corpora at a scale of thousands of user-supplied documents. These processing steps are deployed on a dynamic virtual cluster deployed on XSEDE's Jetstream academic ...
- research-articleJuly 2019
HUBzero®: Novel Concepts Applied to Established Computing Infrastructures to Address Communities' Needs
PEARC '19: Practice and Experience in Advanced Research Computing 2019: Rise of the Machines (learning)Article No.: 14, Pages 1–7https://doi.org/10.1145/3332186.3332238The science gateway framework HUBzero® has been enhanced and further developed since its initial vision in 1996 -- always driven by requirements of the diverse communities applying HUBzero® for their research. HUBzero® is part of a computational ...
- research-articleJuly 2019
Characterizing Performance Improvement of GPUs
PEARC '19: Practice and Experience in Advanced Research Computing 2019: Rise of the Machines (learning)Article No.: 4, Pages 1–5https://doi.org/10.1145/3332186.3332237Evaluating super-computer performance through benchmarking is an integral part of an HPC center operation. It can be used to guide the selection of a system during hardware acquisition, to validate that the selected hardware performs as expected, and to ...
- research-articleJuly 2019
Cultivating the Cyberinfrastructure Workforce via an Intermediate/Advanced Virtual Residency Workshop
- Henry Neeman,
- Hussein M. Al-Azzawi,
- Dana Brunson,
- William Burke,
- Dirk Colbry,
- Jeff T. Falgout,
- James W. Ferguson,
- Sandra Gesing,
- Joshua Gyllinsky,
- Christopher S. Simmons,
- Jason L. Simms,
- Mohammed Tanash,
- Daniel Voss,
- Jason Wells,
- Scott Yockel
PEARC '19: Practice and Experience in Advanced Research Computing 2019: Rise of the Machines (learning)Article No.: 79, Pages 1–8https://doi.org/10.1145/3332186.3332204Cyberinfrastructure (CI) Facilitation is the process of helping researchers to use research computing systems and services to advance their computing-intensive/data-intensive research goals. The growing need for CI Facilitation isn't being met by ...
- research-articleJuly 2018
VC3: A Virtual Cluster Service for Community Computation
- Lincoln Bryant,
- Jeremy Van,
- Benedikt Riedel,
- Robert W. Gardner,
- Jose Caballero Bejar,
- John Hover,
- Ben Tovar,
- Kenyi Hurtado,
- Douglas Thain
PEARC '18: Proceedings of the Practice and Experience on Advanced Research Computing: Seamless CreativityArticle No.: 30, Pages 1–8https://doi.org/10.1145/3219104.3219125A traditional HPC computing facility provides a large amount of computing power but has a fixed environment designed to satisfy local needs. This makes it very challenging for users to deploy complex applications that span multiple sites and require ...
- research-articleJuly 2018
Progress Update on the Development and Implementation of the Advanced Cyberinfrastructure Research & Education Facilitators Virtual Residency Program
- Henry Neeman,
- Hussein M. Al-Azzawi,
- Aaron Bergstrom,
- Zoe K. Braiterman,
- Dana Brunson,
- Dirk Colbry,
- Eduardo Colmenares,
- Akilah N. Fuller,
- Sandra Gesing,
- Maria Kalyvaki,
- Claire Mizumoto,
- Jeho Park,
- Anita Z. Schwartz,
- Jason L. Simms,
- Rustomji Vania
PEARC '18: Proceedings of the Practice and Experience on Advanced Research Computing: Seamless CreativityArticle No.: 71, Pages 1–7https://doi.org/10.1145/3219104.3219117Cyberinfrastructure facilitation -- working directly with researchers to advance the computing-intensive and data-intensive aspects of their investigations, especially via large-scale and advanced computing -- has emerged as a crucial component of ...
- posterJuly 2017
Accelerating Economic Innovation and Impact Discovery Through HPC
PEARC '17: Practice and Experience in Advanced Research Computing 2017: Sustainability, Success and ImpactArticle No.: 55, Pages 1–3https://doi.org/10.1145/3093338.3104183This project aims to use historical census and patent data to determine the factors and conditions that influence innovative productivity, with the intention of applying these findings to foster future creativity and accelerate economic growth. By ...
- posterJuly 2017
Ethical Considerations of Doing Research at Scale
PEARC '17: Practice and Experience in Advanced Research Computing 2017: Sustainability, Success and ImpactArticle No.: 61, Pages 1–3https://doi.org/10.1145/3093338.3104173Research computing has taken on new life with the rise of user-friendly clusters, clouds, and grids. These range from infrastructure-as-a-service platforms like Amazon EC2, to campus-scale HTCondor pools, to national infrastructure machines like those ...