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- research-articleJuly 2024
Adaptive weighted ensemble clustering via kernel learning and local information preservation
AbstractEnsemble clustering refers to learning a robust and accurate consensus result from a collection of base clustering results. Despite extensive research on this topic, it remains challenging due to the absence of raw features and real labels of ...
- research-articleJune 2024
Feature ranking based consensus clustering for feature subset selection
Applied Intelligence (KLU-APIN), Volume 54, Issue 17-18Pages 8154–8169https://doi.org/10.1007/s10489-024-05566-zAbstractFeature subset selection problem is an NP hard problem and there is a need for computationally efficient algorithms that find near optimal feature subsets which improve the performance of a classifier. Two major challenges for feature subset ...
- research-articleApril 2024
Ensemble clustering with low-rank optimal Laplacian matrix learning
AbstractThe co-association (CA) matrix that describes connection relationship between instances is of importance for ensemble clustering. Existing ensemble clustering methods demonstrate that Laplacian matrix can help to improve the quality of CA matrix ...
Highlights- Kullback–Leibler divergence weights are introduced to CA matrix.
- A multi-order Laplacian matrix is embedded to the objective function of ensemble clustering.
- The optimal Laplacian matrix is learned by ADMM.
- Experimental results ...
Algorithm 1038: KCC: A MATLAB Package for k-Means-based Consensus Clustering
ACM Transactions on Mathematical Software (TOMS), Volume 49, Issue 4Article No.: 40, Pages 1–27https://doi.org/10.1145/3616011Consensus clustering is gaining increasing attention for its high quality and robustness. In particular, k-means-based Consensus Clustering (KCC) converts the usual computationally expensive problem to a classic k-means clustering with generalized utility ...
- research-articleJuly 2023
The theranostic value of acetylation gene signatures in obstructive sleep apnea derived by machine learning
Computers in Biology and Medicine (CBIM), Volume 161, Issue Chttps://doi.org/10.1016/j.compbiomed.2023.107058AbstractEpigenetic modifications are implicated in the onset and progression of obstructive sleep apnea (OSA) and its complications through their bidirectional relationship with long-term chronic intermittent hypoxia (IH). However, the exact ...
Graphical abstractDisplay Omitted
Highlights- Machine learning revealed a key role for acetylation modifications in OSA.
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- research-articleFebruary 2023
Self-paced Adaptive Bipartite Graph Learning for Consensus Clustering
ACM Transactions on Knowledge Discovery from Data (TKDD), Volume 17, Issue 5Article No.: 62, Pages 1–35https://doi.org/10.1145/3564701Consensus clustering provides an elegant framework to aggregate multiple weak clustering results to learn a consensus one that is more robust and stable than a single result. However, most of the existing methods usually use all data for consensus ...
- research-articleDecember 2022
Representation learning for clustering via building consensus
Machine Language (MALE), Volume 111, Issue 12Pages 4601–4638https://doi.org/10.1007/s10994-022-06194-9AbstractIn this paper, we focus on unsupervised representation learning for clustering of images. Recent advances in deep clustering and unsupervised representation learning are based on the idea that different views of an input image (generated through ...
- research-articleSeptember 2022
Representation learning using deep random vector functional link networks for clustering
Highlights- Unsupervised RVFL (usRVFL) framework based on manifold regularization proposed to perform unsupervised representation learning.
- Embedded features allow usRVFL to perform unsupervised tasks such as clustering.
- Inspired by consensus ...
Random Vector Functional Link (RVFL) Networks have received a lot of attention due to the fast training speed as the non-iterative solution characteristic. Currently, the main research direction of RVFLs has supervised learning, including semi-...
- research-articleSeptember 2022
Clustering with missing data: which equivalent for Rubin’s rules?
Advances in Data Analysis and Classification (SPADAC), Volume 17, Issue 3Pages 623–657https://doi.org/10.1007/s11634-022-00519-1AbstractMultiple imputation (MI) is a popular method for dealing with missing values. However, the suitable way for applying clustering after MI remains unclear: how to pool partitions? How to assess the clustering instability when data are incomplete? By ...
- ArticleAugust 2022
A Novel Trajectory Inference Method on Single-Cell Gene Expression Data
Intelligent Computing Theories and ApplicationPages 364–373https://doi.org/10.1007/978-3-031-13829-4_31AbstractRecent advances in single-cell RNA sequencing(scRNA-seq) provide the possibility to allow researchers study cellular differentiation and heterogeneity at the single-cell level. Analysis of single-cell gene expression data taken during cell ...
- research-articleJanuary 2022
Bayesian tensor factorization-drive breast cancer subtyping by integrating multi-omics data
Journal of Biomedical Informatics (JOBI), Volume 125, Issue Chttps://doi.org/10.1016/j.jbi.2021.103958Graphical abstractDisplay Omitted
Highlights- A Bayesian tensor factorization-based framework was developed for cancer subtyping.
Breast cancer is a highly heterogeneous disease. Subtyping the disease and identifying the genomic features driving these subtypes are critical for precision oncology for breast cancer. This study focuses on developing a new ...
- research-articleSeptember 2021
Risk profiles for negative and positive COVID-19 hospitalized patients
Computers in Biology and Medicine (CBIM), Volume 136, Issue Chttps://doi.org/10.1016/j.compbiomed.2021.104753AbstractCOVID-19 is a viral infection that affects people differently, where the majority of cases develop mild symptoms, some people require hospitalization, and unfortunately, a small number of patients perish. Hence, identifying risk ...
Highlights- PAM clustering with consensus mapping for the unsupervised risk-profile discovery of COVID-19 subjects.
- research-articleJanuary 2021
Consensus function based on cluster-wise two level clustering
- Mohammad Reza Mahmoudi,
- Hamidreza Akbarzadeh,
- Hamid Parvin,
- Samad Nejatian,
- Vahideh Rezaie,
- Hamid Alinejad-Rokny
Artificial Intelligence Review (ARTR), Volume 54, Issue 1Pages 639–665https://doi.org/10.1007/s10462-020-09862-1AbstractThe ensemble clustering tries to aggregate a number of basic clusterings with the aim of producing a more consistent, robust and well-performing consensus clustering result. The current paper wants to introduce an ensemble clustering method. The ...
- ArticleNovember 2020
Subspace-Weighted Consensus Clustering for High-Dimensional Data
AbstractConsensus clustering aims to combine multiple base clusters into a probably better and more robust clustering result. Despite the significant progress in recent years, the existing consensus clustering approaches are mostly designed for general-...
- research-articleMay 2020
Improving consensus clustering with noise-induced ensemble generation
Expert Systems with Applications: An International Journal (EXWA), Volume 146, Issue Chttps://doi.org/10.1016/j.eswa.2019.113138Highlights- Attribute-noise-induced ensemble generation is proposed for consensus clustering.
Because of the negative perception towards noise, it is commonly eliminated in the process of data cleansing prior to the analysis process. Some studies attempt to employ tolerant or robust algorithms to achieve a reliable outcome. One ...
- research-articleFebruary 2020
Parallel hierarchical architectures for efficient consensus clustering on big multimedia cluster ensembles
Information Sciences: an International Journal (ISCI), Volume 511, Issue CPages 212–228https://doi.org/10.1016/j.ins.2019.09.064AbstractConsensus clustering is a useful tool for robust or distributed clustering applications. However, given the fact that time complexities of the consensus functions scale linearly or quadratically with the number of combined clusterings, ...
- research-articleFebruary 2020
A Fuzzy Consensus Clustering Based Undersampling Approach for Class Imbalanced Learning
ACAI '19: Proceedings of the 2019 2nd International Conference on Algorithms, Computing and Artificial IntelligencePages 133–137https://doi.org/10.1145/3377713.3377733The class imbalance problem is widely studied in the machine learning community, it is present in many real world applications such as spam filtering, anomaly detection and medical diagnosis. In this paper, we propose an adaptive fuzzy c-means based ...
- ArticleDecember 2019
Extracting Community Structure in Multi-relational Network via DeepWalk and Consensus Clustering
AbstractIn the real world, entities are often connected via multiple relations, forming multi-relational network. These complex networks need novel models for their representation and sophisticated tools for their analysis. Community detection is one of ...
- research-articleNovember 2019
Consensus clustering algorithm based on the automatic partitioning similarity graph
AbstractConsensus clustering has been recently applied as a solution to the clustering problem. This combines multiple clusterings of a set of objects into a single integrated clustering. Consensus clustering algorithms attempt to find stable ...
Highlights- The proposed algorithm is able to find the number of original clusters most of the time.
- articleJanuary 2019
Clustering stability-based Evolutionary K-Means
Soft Computing - A Fusion of Foundations, Methodologies and Applications (SOFC), Volume 23, Issue 1Pages 305–321https://doi.org/10.1007/s00500-018-3280-0Evolutionary K-Means (EKM), which combines K-Means and genetic algorithm, solves K-Means' initiation problem by selecting parameters automatically through the evolution of partitions. Currently, EKM algorithms usually choose silhouette index as cluster ...