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- short-paperMarch 2024
KoExPubMed: A Tool for Effective and Customized Knowledge Extraction from PubMed
- Tansel Ozyer,
- Reda Alhajj,
- Jon Rokne,
- Kashfia Sailunaz,
- Gabi Jurca,
- Deniz Bestepe,
- Lama Alhajj,
- Busra Kaartay
ASONAM '23: Proceedings of the 2023 IEEE/ACM International Conference on Advances in Social Networks Analysis and MiningPages 431–435https://doi.org/10.1145/3625007.3629127An exponential growth in the literature in general and the medical literature in particular raises a need for effective intelligent analysis strategies and tools to provide valuable insights to researchers about the current evolving literature. While ...
- surveyOctober 2021
Transcriptional Regulatory Network Topology with Applications to Bio-inspired Networking: A Survey
ACM Computing Surveys (CSUR), Volume 54, Issue 8Article No.: 166, Pages 1–36https://doi.org/10.1145/3468266The advent of the edge computing network paradigm places the computational and storage resources away from the data centers and closer to the edge of the network largely comprising the heterogeneous IoT devices collecting huge volumes of data. This ...
- research-articleAugust 2018
Language Gene Basis for Precision Personalized Education and Liberal Education (I)
ICSET 2018: Proceedings of the 2nd International Conference on E-Society, E-Education and E-TechnologyPages 112–116https://doi.org/10.1145/3268808.3268859How individual biological phenotypes are encoded by genome sequences will be elucidated more and more in the post-genomic era, and it is possible to establish personalized accurate education approaches based on personal gene information, including ...
- articleJanuary 2016
TIGER: an evolutionary search for Top Inter-GEne Relations
International Journal of Data Mining and Bioinformatics (IJDMB), Volume 16, Issue 2Pages 170–182https://doi.org/10.1504/IJDMB.2016.080042Relative Expression Analysis RXA plays an important role in biomarker discovery and microarray data classification. It focuses on ordering relationships between the expression of small sets of genes rather than their raw values. Most of the RXA ...
- research-articleApril 2015
Inference of disease-specific gene interaction network using a Bayesian network learned by genetic algorithm
SAC '15: Proceedings of the 30th Annual ACM Symposium on Applied ComputingPages 47–53https://doi.org/10.1145/2695664.2695944An important goal of systems biology is to understand and identify mechanisms of the human body system. Genes play functional roles in the context of complex pathways. Analysis of genes as networks is therefore important to understand whole system ...
- articleMarch 2009
Time lagged recurrent neural network for temporal gene expression classification
International Journal of Computational Intelligence in Bioinformatics and Systems Biology (IJCIBSB), Volume 1, Issue 1Pages 86–99https://doi.org/10.1504/IJCIBSB.2009.024053Heterogeneous gene expressions provide insight into the biological role of gene interaction with the environment, disease development and drug effect at the molecular level. We propose Time Lagged Recurrent Neural Network with trajectory learning for ...