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- research-articleSeptember 2009
Estimating the number of clusters via system evolution for cluster analysis of gene expression data
IEEE Transactions on Information Technology in Biomedicine (TITB), Volume 13, Issue 5Pages 848–853https://doi.org/10.1109/TITB.2009.2025119The estimation of the number of clusters (NC) is one of crucial problems in the cluster analysis of gene expression data. Most approaches available give their answers without the intuitive information about separable degrees between clusters. However, ...
- research-articleSeptember 2009
Microarray gene cluster identification and annotation through cluster ensemble and EM-based informative textual summarization
IEEE Transactions on Information Technology in Biomedicine (TITB), Volume 13, Issue 5Pages 832–840https://doi.org/10.1109/TITB.2009.2023984Generating high-quality gene clusters and identifying the underlying biological mechanism of the gene clusters are the important goals of clustering gene expression analysis. To get high-quality cluster results, most of the current approaches rely on ...
- research-articleJuly 2009
Tumor clustering using nonnegative matrix factorization with gene selection
IEEE Transactions on Information Technology in Biomedicine (TITB), Volume 13, Issue 4Pages 599–607https://doi.org/10.1109/TITB.2009.2018115Tumor clustering is becoming a powerful method in cancer class discovery. Nonnegative matrix factorization (NMF) has shown advantages over other conventional clustering techniques. Nonetheless, there is still considerable room for improving the ...
- research-articleJuly 2009
A pattern similarity scheme for medical image retrieval
- Dimitris K. Iakovidis,
- Nikos Pelekis,
- Evangelos E. Kotsifakos,
- Ioannis Kopanakis,
- Haralampos Karanikas,
- Yannis Theodoridis
IEEE Transactions on Information Technology in Biomedicine (TITB), Volume 13, Issue 4Pages 442–450https://doi.org/10.1109/TITB.2008.923144In this paper, we propose a novel scheme for efficient content-based medical image retrieval, formalized according to the PAtterns for Next generation DAtabase systems (PANDA) framework for pattern representation and management. The proposed scheme ...
- research-articleJuly 2009
Discovering genes-diseases associations from specialized literature using the grid
IEEE Transactions on Information Technology in Biomedicine (TITB), Volume 13, Issue 4Pages 554–560https://doi.org/10.1109/TITB.2008.2007755This paper proposes a novel method for text mining on the Grid, aimed at pointing out hidden relationships for hypothesis generation and suitable for semi-interactive querying. The method is based on unsupervised clustering and the outputs are ...
- research-articleJuly 2008
Mining Unexpected Temporal Associations: Applications in Detecting Adverse Drug Reactions
IEEE Transactions on Information Technology in Biomedicine (TITB), Volume 12, Issue 4Pages 488–500https://doi.org/10.1109/TITB.2007.900808In various real-world applications, it is very useful mining unanticipated episodes where certain event patterns unexpectedly lead to outcomes, e.g., taking two medicines together sometimes causing an adverse reaction. These unanticipated episodes are ...
- research-articleNovember 2007
Knowledge-Based Data Analysis: First Step Toward the Creation of Clinical Prediction Rules Using a New Typicality Measure
IEEE Transactions on Information Technology in Biomedicine (TITB), Volume 11, Issue 6Pages 651–660https://doi.org/10.1109/TITB.2006.889693Clinical prediction rules play an important role in medical practice. They expedite diagnosis and limit unnecessary tests. However, the rule creation process is time consuming and expensive. With the current developments of efficient data mining ...
- research-articleMarch 2004
Cluster analysis of gene expression data based on self-splitting and merging competitive learning
IEEE Transactions on Information Technology in Biomedicine (TITB), Volume 8, Issue 1Pages 5–15https://doi.org/10.1109/TITB.2004.824724Cluster analysis of gene expression data from a cDNA microarray is useful for identifying biologically relevant groups of genes. However, finding the natural clusters in the data and estimating the correct number of clusters are still two largely ...