Location via proxy:   [ UP ]  
[Report a bug]   [Manage cookies]                
Skip to main content
Springer Nature Link
Log in

A Framework for Aligning Ontologies

  • Conference paper
Principles and Practice of Semantic Web Reasoning (PPSWR 2005)

Part of the book series: Lecture Notes in Computer Science ((LNISA,volume 3703))

  • 529 Accesses

Abstract

Ontologies are an important technology for the Semantic Web. In different areas ontologies have already been developed and many of these ontologies contain overlapping information. Often we would therefore want to be able to use multiple ontologies and thus the ontologies need to be aligned. Currently, there exist a number of systems that support users in aligning ontologies, but not many comparative evaluations have been performed.

In this paper we present a general framework for aligning ontologies where different alignment strategies can be combined. Further, we exemplify the use of the framework by describing a system (SAMBO) that is developed according to this framework. Within this system we have implemented some already existing alignment algorithms as well as some new algorithms. We also show how the framework can be used to experiment with combinations of strategies. This is a first step towards defining a framework that can be used for comparative evaluations of alignment strategies. For our tests we used several well-known bio-ontologies.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Log in via an institution

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

Similar content being viewed by others

References

  1. Collins, F., Green, E., Guttmacher, A., Guyer, M.: A vision for the future of genomics research. Nature 422, 835–847 (2003)

    Article  Google Scholar 

  2. Doan, A., Madhavan, J., Domingos, P., Halevy, A.: Ontology matching: A machine learning approach. In: Staab, S. (ed.) Handbook on Ontologies in Information Systems, pp. 397–416. Springer, Heidelberg (2003)

    Google Scholar 

  3. Ehrig, M., Staab, S.: QOM - quick ontology mapping. In: McIlraith, S.A., Plexousakis, D., van Harmelen, F. (eds.) ISWC 2004. LNCS, vol. 3298, pp. 683–697. Springer, Heidelberg (2004)

    Chapter  Google Scholar 

  4. FaCT. http://www.cs.man.ac.uk/~horrocks/FaCT/

  5. The Gene Ontology Consortium, Gene Ontology: tool for the unification of biology. Nature Genetics 25(1), 25–29 (2000), http://www.geneontology.org/

  6. Gómez-Pérez, A.: Ontological Engineering: A state of the Art. Expert Update 2(3), 33–43 (1999)

    Google Scholar 

  7. Giunchiglia, F., Shvaiko, P., Yatskevich, M.: S-match: an algorithm and an implementation of semantic matching. In: Bussler, C.J., Davies, J., Fensel, D., Studer, R. (eds.) ESWS 2004. LNCS, vol. 3053, pp. 61–75. Springer, Heidelberg (2004)

    Chapter  Google Scholar 

  8. KnowledgeWeb Consortium, Deliverable 2.2.4 (Specification of a methodology, general criteria, and benchmark suites for benchmarking ontology tools) (2004), http://knowledgeweb.semanticweb.org/

  9. Kotis, K., Vouros, G.A.: The HCONE Approach to Ontology Merging. In: Bussler, C.J., Davies, J., Fensel, D., Studer, R. (eds.) ESWS 2004. LNCS, vol. 3053, pp. 137–151. Springer, Heidelberg (2004)

    Chapter  Google Scholar 

  10. Lambrix, P.: Ontologies in Bioinformatics and Systems Biology. In: Artificial Intelligence Methods and Tools for Systems Biology, Ch. 8, pp. 129–146. Springer, Heidelberg (2004) ISBN: 1-4020-2859-8

    Chapter  Google Scholar 

  11. Le, B.T., Kuntz, R.D., Gandon, F.: On ontology matching problem (for building a corporate semantic web in a multi-communities organization). In: Proceedings of 6th International Conference on Enterprise Information Systems (2004)

    Google Scholar 

  12. Lambrix, P., Edberg, A.: Evaluation of ontology merging tools in bioinformatics. In: Proceedings of the Pacific Symposium on Biocomputing, pp. 589–600 (2003)

    Google Scholar 

  13. Lambrix, P., Tan, H.: Merging DAML+OIL Ontologies. In: Barzdins, C. (ed.) Databases and Information Systems - Selected Papers from the Sixth International Baltic Conference on Databases and Information Systems, pp. 249–258. IOS Press, Amsterdam (2005)

    Google Scholar 

  14. McGuinness, D., Fikes, R., Rice, J., Wilder, S.: An Environment for Merging and Testing Large Ontologies. In: Proceedings of the Seventh International Conference on Principles of Knowledge Representation and Reasoning, pp. 483–493 (2000)

    Google Scholar 

  15. Mitra, P., Wiederhold, G.: Resolving terminological heterogeneity in ontologies. In: Proceedings of the ECAI Workshop on Ontologies and Semantic Interoperability (2002)

    Google Scholar 

  16. Noy, N.F., Musen, M.: PROMPT: Algorithm and Tool for Automated Ontology Merging and Alignment. In: Proceedings of Seventeenth National Conference on Artificial Intelligence, pp. 450–455 (2000)

    Google Scholar 

  17. Noy, N.F., Musen, M.: Anchor-PROMPT: Using Non-Local Context for Semantic Matching. In: Proceedings of the IJCAI Workshop on Ontologies and Information Sharing, pp. 63–70 (2001)

    Google Scholar 

  18. Noy, N.F., Musen, M.: Evaluating Ontology-Mapping Tools: Requirements and Experience. In: Proceedings of the EKAW Workshop on Evaluation of Ontology Tools (2002)

    Google Scholar 

  19. Open Biomedical Ontologies, http://obo.sourceforge.net/

  20. OntoWeb Consortium, Deliverables 1.3 (A survey on ontology tools) and 1.4 (A survey on methodologies for developing, maintaining, evaluating and reengineering ontologies) (2002), http://www.ontoweb.org

  21. PubMed, http://www.ncbi.nlm.nih.gov/entrez/query.fcgi

  22. Pinto, H.S., Gómez-Pérez, A., Martins, J.P.: Some Issues on Ontology Integration. In: Proceedings of the IJCAI Workshop on Ontologies and Problem-Solving Methods (1999)

    Google Scholar 

  23. REWERSE., Backofen, R., Badea, M., Burger, A., Fages, F., Lambrix, P., Nutt, W., Schroeder, M., Soliman, S., Will, S.: State-of-the-art in Bioinformatics. REWERSE Deliverable A2-D1 (2004)

    Google Scholar 

  24. REWERSE., Backofen, R., Badea, M., Barahona, P., Burger, A., Dawelbait, G., Doms, A., Fages, F., Hotaran, A., Jakonienė, V., Krippahl, L., Lambrix, P., McLeod, K., Möller, S., Nutt, W., Olsson, B., Schroeder, M., Soliman, S., Tan, H., Tilivea, D., Will, S.: Usage of bioinformatics tools and identification of information sources. REWERSE Deliverable A2-D2 (2005)

    Google Scholar 

  25. Racer, http://www.cs.concordia.ca/~haarslev/racer/

  26. Stevens, R., Goble, C., Bechhofer, S.: Ontology-based knowledge representation for bioinformatics. Briefings in Bioinformatics 1(4), 398–414 (2000)

    Article  Google Scholar 

  27. Su, X.M., Hakkarainen, S., Brasethvik, T.: Semantic enrichment for improving systems interoperability. In: Proceedings of the 2004 ACM Symposium on Applied Computing, pp. 1634–1641 (2004)

    Google Scholar 

  28. Stumme, G., Mädche, A.: FCA-Merge: Bottom-up merging of ontologies. In: Proceedings of the 17th International Joint Conference on Artificial Intelligence, pp. 225–230 (2001)

    Google Scholar 

  29. Sushama, P., Yun, P., Timothy, F.: Using Explicit Information To Map Between Two Ontologies. In: Proceedings of the AAMAS 2002 Workshop on Ontologies in Agent Systems (2002)

    Google Scholar 

  30. Takai-Igarashi, T., Nadaoka, Y., Kaminuma, T.: A Database for Cell Signaling Networks. Journal of Computational Biology 5(4), 747–754 (1998)

    Article  Google Scholar 

  31. UMLS, http://www.nlm.nih.gov/research/umls/about_umls.html

  32. WordNet, http://wordnet.princeton.edu/

  33. Kalfoglou, Y., Schorlemmer, M.: IF-Map: an ontology mapping method based on information flow theory. Journal of data semantics 1, 98–127 (2003)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

  1. Department of Computer and Information Science, Linköpings universitet, Sweden

    Patrick Lambrix & He Tan

Authors
  1. Patrick Lambrix
    View author publications

    You can also search for this author in PubMed Google Scholar

  2. He Tan
    View author publications

    You can also search for this author in PubMed Google Scholar

Editor information

Editors and Affiliations

  1. Projet Contraintes, INRIA Rocquencourt, Domaine de Voluceau, BP105, 78153, Le Chesnay Cedex, France

    François Fages

  2. Projet Contraintes, INRIA Rocquencourt, BP105, 78153, Le Chesnay Cedex, France

    Sylvain Soliman

Rights and permissions

Reprints and permissions

Copyright information

© 2005 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Lambrix, P., Tan, H. (2005). A Framework for Aligning Ontologies. In: Fages, F., Soliman, S. (eds) Principles and Practice of Semantic Web Reasoning. PPSWR 2005. Lecture Notes in Computer Science, vol 3703. Springer, Berlin, Heidelberg. https://doi.org/10.1007/11552222_2

Download citation

  • DOI: https://doi.org/10.1007/11552222_2

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-28793-3

  • Online ISBN: 978-3-540-32028-9

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics