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Algorithms in Bioinformatics

6th International Workshop, WABI 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings

  • Conference proceedings
  • © 2006

Overview

Editors:
  1. Philipp Bücher

    1. Ecole Polytechnique Fédérale de Lausanne, Switzerland

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  2. Bernard M. E. Moret

    1. Laboratory for Computational Biology and Bioinformatics, EPFL (Ecole Polytechnique Fédérale de Lausanne), Swiss Institute of Bioinformatics, Lausanne, Switzerland

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    You can also search for this editor in PubMed   Google Scholar

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 4175)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: WABI 2006.

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Keywords

Table of contents (36 papers)

  1. Front Matter

    Download chapter PDF

  2. Measures of Codon Bias in Yeast, the tRNA Pairing Index and Possible DNA Repair Mechanisms

    • Markus T. Friberg, Pedro Gonnet, Yves Barral, Nicol N. Schraudolph, Gaston H. Gonnet
    Pages 1-11

  3. Decomposing Metabolomic Isotope Patterns

    • Sebastian Böcker, Matthias C. Letzel, Zsuzsanna Lipták, Anton Pervukhin
    Pages 12-23

  4. A Method to Design Standard HMMs with Desired Length Distribution for Biological Sequence Analysis

    • Hongmei Zhu, Jiaxin Wang, Zehong Yang, Yixu Song
    Pages 24-31

  5. Efficient Model-Based Clustering for LC-MS Data

    • Marta Łuksza, Bogusław Kluge, Jerzy Ostrowski, Jakub Karczmarski, Anna Gambin
    Pages 32-43

  6. A Bayesian Algorithm for Reconstructing Two-Component Signaling Networks

    • Lukas Burger, Erik van Nimwegen
    Pages 44-55

  7. Linear-Time Haplotype Inference on Pedigrees Without Recombinations

    • M. Y. Chan, Wun-Tat Chan, Francis Y. L. Chin, Stanley P. Y. Fung, Ming-Yang Kao
    Pages 56-67

  8. Phylogenetic Network Inferences Through Efficient Haplotyping

    • Yinglei Song, Chunmei Liu, Russell L. Malmberg, Liming Cai
    Pages 68-79

  9. Beaches of Islands of Tractability: Algorithms for Parsimony and Minimum Perfect Phylogeny Haplotyping Problems

    • Leo van Iersel, Judith Keijsper, Steven Kelk, Leen Stougie
    Pages 80-91

  10. On the Complexity of SNP Block Partitioning Under the Perfect Phylogeny Model

    • Jens Gramm, Tzvika Hartman, Till Nierhoff, Roded Sharan, Till Tantau
    Pages 92-102

  11. How Many Transcripts Does It Take to Reconstruct the Splice Graph?

    • Paul Jenkins, Rune Lyngsø, Jotun Hein
    Pages 103-114

  12. Multiple Structure Alignment and Consensus Identification for Proteins

    • Jieping Ye, Ivaylo Ilinkin, Ravi Janardan, Adam Isom
    Pages 115-125

  13. Procrastination Leads to Efficient Filtration for Local Multiple Alignment

    • Aaron E. Darling, Todd J. Treangen, Louxin Zhang, Carla Kuiken, Xavier Messeguer, Nicole T. Perna
    Pages 126-137

  14. Controlling Size When Aligning Multiple Genomic Sequences with Duplications

    • Minmei Hou, Piotr Berman, Louxin Zhang, Webb Miller
    Pages 138-149

  15. Reducing Distortion in Phylogenetic Networks

    • Daniel H. Huson, Mike A. Steel, Jim Whitfield
    Pages 150-161

  16. Imputing Supertrees and Supernetworks from Quartets

    • Barbara Hollan, Glenn Conner, Katharina T. Huber, Vincent Moulton
    Pages 162-162

  17. A Unifying View of Genome Rearrangements

    • Anne Bergeron, Julia Mixtacki, Jens Stoye
    Pages 163-173

  18. Efficient Sampling of Transpositions and Inverted Transpositions for Bayesian MCMC

    • István Miklós, Timothy Brooks Paige, Péter Ligeti
    Pages 174-185

  19. Alignment with Non-overlapping Inversions in O(n 3)-Time

    • Augusto F. Vellozo, Carlos E. R. Alves, Alair Pereira do Lago
    Pages 186-196

  20. Accelerating Motif Discovery: Motif Matching on Parallel Hardware

    • Geir Kjetil Sandve, Magnar Nedland, Øyvind Bø Syrstad, Lars Andreas Eidsheim, Osman Abul, Finn Drabløs
    Pages 197-206
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Other volumes

  1. Algorithms in Bioinformatics

Editors and Affiliations

  • Ecole Polytechnique Fédérale de Lausanne, Switzerland

    Philipp Bücher

  • Laboratory for Computational Biology and Bioinformatics, EPFL (Ecole Polytechnique Fédérale de Lausanne), Swiss Institute of Bioinformatics, Lausanne, Switzerland

    Bernard M. E. Moret

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