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Structures and Bio-language to Simulate Transition P Systems on Digital Computers

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Multiset Processing (WMC 2000)

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 2235))

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Abstract

The aim of this paper is to show that some computational models inspired from biological membranes, such as P systems, can be simulated on digital computers in an efficient manner. To this aim, it is necessary to characterize non-determinism and parallel execution of evolution rules inside regions. Both these issues are formally described here in order to obtain a feasible description in terms of data structures and operations able to be implemented in a functional programming language. Static and dynamic structures of transition P systems are formalised in order to define a bio-language to represent them. Finally, a draft of a language for describing a transition P systems is presented. It will facilitate the description of transition P systems in terms of sentences in a high level programming language; such sentences will define a program. A process of compilation will parse the program to appropriate data structures and will launch the execution of the simulation process.

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References

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Author information

Authors and Affiliations

  1. Dpto. de Lenguajes, Proyectos y Sistemas Inform’aticos, Escuela Unversitaria de Inform’atica, Universidad Polit’ecnica de Madrid, Crta. de Valencia Km. 7, 28031, Madrid, Spain

    Fernando Arroyo & Carmen Luengo

  2. Dpto. de Inteligencia Artificial, Facultad de Inform’atica, Universidad Polit’ecnica de Madrid, Campus de Montegancedo, 28660, Madrid, Boadilla del Monte, Spain

    Angel V. Baranda & Juan Castellanos

  3. Dpto. de Organizaci’on y Estructura de la Informaci’on, Escuela Unversitaria de Inform’atica, Universidad Polit’ecnica de Madrid, Crta. de Valencia Km. 7, 28031, Madrid, Spain

    Luis F. Mingo

Authors
  1. Fernando Arroyo
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  2. Angel V. Baranda
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  3. Juan Castellanos
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  4. Carmen Luengo
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  5. Luis F. Mingo
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Editor information

Editors and Affiliations

  1. Department of Computer Science Center for Discrete Mathematics and Theoretical Computer Science, University of Auckland, Auckland

    Cristian S. Calude

  2. Institute of Mathematics of the Romanian Academy, Romanian

    Gheorghe PĂun

  3. Leiden Institute for Advanced Computer Science, Leiden University, Leiden

    Grzegorz Rozenberg

  4. Turku Center for Computer Science, TUCS, Turku

    Arto Salomaa

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© 2001 Springer-Verlag Berlin Heidelberg

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Cite this paper

Arroyo, F., Baranda, A.V., Castellanos, J., Luengo, C., Mingo, L.F. (2001). Structures and Bio-language to Simulate Transition P Systems on Digital Computers. In: Calude, C.S., PĂun, G., Rozenberg, G., Salomaa, A. (eds) Multiset Processing. WMC 2000. Lecture Notes in Computer Science, vol 2235. Springer, Berlin, Heidelberg. https://doi.org/10.1007/3-540-45523-X_1

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  • DOI: https://doi.org/10.1007/3-540-45523-X_1

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  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-43063-6

  • Online ISBN: 978-3-540-45523-3

  • eBook Packages: Springer Book Archive

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