Location via proxy:   [ UP ]  
[Report a bug]   [Manage cookies]                
Skip to main content

Gyral Growth Patterns of Macaque Brains Revealed by Scattered Orthogonal Nonnegative Matrix Factorization

  • Conference paper
  • First Online:
Machine Learning in Medical Imaging (MLMI 2020)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 12436))

Included in the following conference series:

  • 3657 Accesses

Abstract

Cerebral cortex development undergoes a variety of alternate processes, providing valuable information to study the developmental mechanism of the cortical folding and the structural and functional architectures. Many longitudinal studies are performed on the development of sulci using features like sulcal depth, but the gyral system is less studied. To fill the gap, we propose a novel feature, termed gyral height, to quantify the longitudinal developmental patterns of gyri. Another practical problem is the difficulty of obtaining data for all time points for all subjects, even in animal datasets, such as the macaque neurodevelopment dataset in this work. Therefore, we develop a novel method by introducing a scattered factor to the orthogonal nonnegative matrix factorization to align data both longitudinally and cross-sectionally. By this method, the gyral height feature maps are decomposed into orthogonal cortical clusters which encode spatiotemporal patterns. Close relations are found between these clusters and anatomical, structural connective and functional metrics, suggesting the potential of the novel cortical feature and the method in investigating the brain development.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Toga, A.W., Thompson, P.M., Sowell, E.R.: Mapping brain maturation. Focus 29(3), 148–390 (2006)

    Google Scholar 

  2. Lebel, C., Walker, L., Leemans, A., Phillips, L., Beaulieu, C.: Microstructural maturation of the human brain from childhood to adulthood. Neuroimage 40(3), 1044–1055 (2008)

    Article  Google Scholar 

  3. Paus, T.: Mapping brain maturation and cognitive development during adolescence. Trends Cogn. Sci. 9(2), 60–68 (2005)

    Article  Google Scholar 

  4. Williams, R., Bokhari, S., Silverstein, P., Pinson, D., Kumar, A., Buch, S.: Nonhuman primate models of NeuroAIDS. J. NeuroVirol. 14(4), 292–300 (2008). https://doi.org/10.1080/13550280802074539

    Article  Google Scholar 

  5. Lacreuse, A., Herndon, J.G.: Nonhuman primate models of cognitive aging. In: Animal Models of Human Cognitive Aging, pp. 1–30. Humana Press (2009)

    Google Scholar 

  6. Rilling, J.K.: Comparative primate neuroimaging: insights into human brain evolution. Trends Cogn. Sci. 18(1), 46–55 (2014)

    Article  Google Scholar 

  7. Price, K.C., Coe, C.L.: Maternal constraint on fetal growth patterns in the rhesus monkey (Macaca mulatta): the intergenerational link between mothers and daughters. Hum. Reprod. 15(2), 452–457 (2000)

    Article  Google Scholar 

  8. Young, J.T., et al.: The UNC-Wisconsin rhesus macaque neurodevelopment database: a structural MRI and DTI database of early postnatal development. Front. Neurosci. 11, 29 (2017)

    Article  Google Scholar 

  9. Wang, F., et al.: Developmental topography of cortical thickness during infancy. Proc. Natl. Acad. Sci. 116(32), 15855–15860 (2019)

    Article  Google Scholar 

  10. Lohmann, G., Von Cramon, D.Y., Colchester, A.C.: Deep sulcal landmarks provide an organizing framework for human cortical folding. Cereb. Cortex 18(6), 1415–1420 (2008)

    Article  Google Scholar 

  11. Yeo, B.T., Sabuncu, M.R., Vercauteren, T., Ayache, N., Fischl, B., Golland, P.: Spherical demons: fast diffeomorphic landmark-free surface registration. IEEE Trans. Med. Imaging 29(3), 650–668 (2009)

    Article  Google Scholar 

  12. Reardon, P.K., et al.: Normative brain size variation and brain shape diversity in humans. Science 360(6394), 1222–1227 (2018)

    Article  Google Scholar 

  13. Chen, H., Li, Y., Ge, F., Li, G., Shen, D., Liu, T.: Gyral net: a new representation of cortical folding organization. Med. Image Anal. 42, 14–25 (2017)

    Article  Google Scholar 

  14. Nie, J., et al.: Axonal fiber terminations concentrate on gyri. Cereb. Cortex 22(12), 2831–2839 (2012)

    Article  Google Scholar 

  15. Van Essen, D.C.: A tension-based theory of morphogenesis and compact wiring in the central nervous system. Nature 385(6614), 313–318 (1997)

    Article  Google Scholar 

  16. Ding, C., Li, T., Peng, W., Park, H.: Orthogonal nonnegative matrix t-factorizations for clustering. In Proceedings of the 12th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, pp. 126–135, August 2006

    Google Scholar 

  17. Wang, L., et al.: LINKS: learning-based multi-source IntegratioN frameworK for Segmentation of infant brain images. NeuroImage 108, 160–172 (2015)

    Article  Google Scholar 

  18. Wang, L., et al.: Segmentation of neonatal brain MR images using patch-driven level sets. NeuroImage 84, 141–158 (2014)

    Article  Google Scholar 

  19. Wang, L., Shi, F., Yap, P.T., Lin, W., Gilmore, J.H., Shen, D.: Longitudinally guided level sets for consistent tissue segmentation of neonates. Hum. Brain Mapp. 34(4), 956–972 (2013)

    Article  Google Scholar 

  20. Li, G., Nie, J., Wu, G., Wang, Y., Shen, D., Initiative, A.D.N.: Consistent reconstruction of cortical surfaces from longitudinal brain MR images. Neuroimage 59(4), 3805–3820 (2012)

    Article  Google Scholar 

  21. Li, G., et al.: Measuring the dynamic longitudinal cortex development in infants by reconstruction of temporally consistent cortical surfaces. Neuroimage 90, 266–279 (2014)

    Article  Google Scholar 

  22. Andersson, J.L., Sotiropoulos, S.N.: An integrated approach to correction for off-resonance effects and subject movement in diffusion MR imaging. Neuroimage 125, 1063–1078 (2016)

    Article  Google Scholar 

  23. Jenkinson, M., Beckmann, C.F., Behrens, T.E., Woolrich, M.W., Smith, S.M.: Fsl. Neuroimage, 62(2), 782–790 (2012)

    Google Scholar 

  24. Yeh, F.C., Wedeen, V.J., Tseng, W.Y.I.: Generalized q-sampling imaging. IEEE Trans. Med. Imaging 29(9), 1626–1635 (2010)

    Article  Google Scholar 

  25. Yeh, F.C., Verstynen, T.D., Wang, Y., Fernández-Miranda, J.C., Tseng, W.Y.I.: Deterministic diffusion fiber tracking improved by quantitative anisotropy. PLoS ONE 8(11), e80713 (2013)

    Article  Google Scholar 

  26. Xia, J., et al.: Mapping hemispheric asymmetries of the macaque cerebral cortex during early brain development. Hum. Brain Mapp. 41(1), 95–106 (2020)

    Article  Google Scholar 

  27. Paxinos, G., Huang, X.F., Toga, A.W.: The rhesus monkey brain in stereotaxic coordinates (2000)

    Google Scholar 

  28. Lewis, J.W., Van Essen, D.C.: Corticocortical connections of visual, sensorimotor, and multimodal processing areas in the parietal lobe of the macaque monkey. J. Comp. Neurol. 428(1), 112–137 (2000)

    Article  Google Scholar 

Download references

Acknowledgements

T Zhang, L Du, X Jiang and L Guo were supported by the National Natural Science Foundation of China (31971288, 61973255, 61703073, 61976045, 61936007 and U1801265).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Tuo Zhang .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2020 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Zhang, S. et al. (2020). Gyral Growth Patterns of Macaque Brains Revealed by Scattered Orthogonal Nonnegative Matrix Factorization. In: Liu, M., Yan, P., Lian, C., Cao, X. (eds) Machine Learning in Medical Imaging. MLMI 2020. Lecture Notes in Computer Science(), vol 12436. Springer, Cham. https://doi.org/10.1007/978-3-030-59861-7_40

Download citation

  • DOI: https://doi.org/10.1007/978-3-030-59861-7_40

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-59860-0

  • Online ISBN: 978-3-030-59861-7

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics