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Multi-disciplinary Research: Open Science Data Lake

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New Trends in Database and Information Systems (ADBIS 2023)

Abstract

Open Science aims to establish an interdisciplinary exchange between researchers through knowledge sharing and open data. However, this interdisciplinary exchange requires exchanges between different research domains and there is currently no simple computerized solution to this problem. Although the data lake adapts well to the constraints of variety and volume offered by the Open Science context, it is necessary to adapt this solution to (1) the accompaniment of data with metadata having a specific metadata model depending on the domain and community of origin, (2) the cohabitation of open and closed data within the same open data management platform, and (3) a wide diversity of pre-existing research data management platforms to deal with. We propose to define the Open Science Data Lake (OSDL) by adapting the Data Lake to this particular context and allowing interoperability with pre-existing research data management platforms. We propose a functional architecture that integrates multi-model metadata management, virtual integration of externally stored (meta)data and security mechanisms to manage the openness of the platforms and data. We propose an open-source and plug-and-play technical architecture that makes adoption as easy as possible. We set up a proof-of-concept experiment to evaluate our solution with different users from the research community and show that OSDL can meet the needs of transparent multidisciplinary data research.

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Notes

  1. 1.

    https://www.gaia-data.org/en/.

  2. 2.

    https://www.re3data.org/.

  3. 3.

    http://www.biosino.org/bmdc/aboutUs/organization.

  4. 4.

    https://www.re3data.org/.

  5. 5.

    https://ada.edu.au/.

  6. 6.

    https://data.openei.org/data_lakes.

  7. 7.

    https://fairsharing.org/.

  8. 8.

    https://dataverse.org/presentations/open-monolith-keeping-your-codebase-and-your-headaches-small.

  9. 9.

    http://github.com/vincentnam/docker_datalake.

  10. 10.

    https://open-metadata.org/.

  11. 11.

    https://opendatadiscovery.org/.

  12. 12.

    https://atlas.apache.org/.

  13. 13.

    https://anonymous.4open.science/r/opendatalake_expe-6522.

  14. 14.

    https://www.aeris-data.fr/.

  15. 15.

    http://www.odatis-ocean.fr/.

  16. 16.

    https://www.rcsb.org/.

  17. 17.

    https://map.scnat.ch/en/activities/open_data_survey.

References

  1. Barry, A., et al.: Logics of interdisciplinarity. Econ. Soc. 37(1), 20–49 (2008)

    Google Scholar 

  2. Bezjak, S., et al.: Open Science Training Handbook. Zenodo (2018). https://doi.org/10.5281/zenodo.1212496

  3. Bird, I., et al.: Architecture and prototype of a WLCG data lake for HL-LHC. EPJ Web Confer. 214, 04024 (2019). EDP Sciences (2019)

    Google Scholar 

  4. Bugbee, K., et al.: Advancing open science through innovative data system solutions: the joint ESA-NASA multi-mission algorithm and analysis platform (MAAP)’s data ecosystem. In: IGARSS 2020 - IEEE International Geoscience and Remote Sensing Symposium, pp. 3097–3100. IEEE (2020)

    Google Scholar 

  5. Dang, V.N., Aussenac-Gilles, N., Megdiche, I., Ravat, F.: Interoperability of open science metadata: what about the reality? In: Nurcan, S., Opdahl, A.L., Mouratidis, H., Tsohou, A. (eds.) Research Challenges in Information Science: Information Science and the Connected World. RCIS 2023. LNBIP, vol. 476. Springer, Cham (2023). https://doi.org/10.1007/978-3-031-33080-3_28

  6. Dang, V.N., Zhao, Y., Megdiche, I., Ravat, F.: A zone-based data lake architecture for IoT, small and big data. In: 25th International Database Engineering & Applications Symposium (IDEAS 2021) (2021)

    Google Scholar 

  7. Di Maria, R., Dona, R.: Escape data lake. EPJ Web Confer. 251, 02056 (2021). EDP Sciences (2021)

    Google Scholar 

  8. Juarez, J.D., Schick, M., Puechmaille, D., Stoicescu, M., Saulyak, B.: Destination earth data lake. Tech. rep, Copernicus Meetings (2023)

    Google Scholar 

  9. Peisert, S., et al.: Open science cyber risk profile (oscrp), version 1.3.3 (2017). https://doi.org/10.5281/zenodo.7268749

  10. Ravat, F., Zhao, Y.: Data lakes: trends and perspectives. In: Hartmann, S., Küng, J., Chakravarthy, S., Anderst-Kotsis, G., Tjoa, A.M., Khalil, I. (eds.) DEXA 2019. LNCS, vol. 11706, pp. 304–313. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-27615-7_23

    Chapter  Google Scholar 

  11. Ren, P., et al.: MHDP: an efficient data lake platform for medical multi-source heterogeneous data. In: Xing, C., Fu, X., Zhang, Y., Zhang, G., Borjigin, C. (eds.) WISA 2021. LNCS, vol. 12999, pp. 727–738. Springer, Cham (2021). https://doi.org/10.1007/978-3-030-87571-8_63

    Chapter  Google Scholar 

  12. Sansone, S.A., et al.: Fairsharing as a community approach to standards, repositories and policies. Nat. Biotechnol. 37(4), 358–367 (2019)

    Article  Google Scholar 

  13. Sarramia, D., Claude, A., Ogereau, F., Mezhoud, J., Mailhot, G.: CEBA: a data lake for data sharing and environmental monitoring. Sensors 22(7), 2733 (2022)

    Article  Google Scholar 

  14. Sawadogo, P., Darmont, J.: On data lake architectures and metadata management. J. Intell. Inf. Syst. 56, 97–120 (2021)

    Article  Google Scholar 

  15. Tanhua, T., et al.: Ocean fair data services. Front. Mar. Sci. 6, 440 (2019)

    Article  Google Scholar 

  16. Wang, Y., et al.: PGG.SV: a whole-genome-sequencing-based structural variant resource and data analysis platform. Nucleic Acids Res. 51(D1), D1109–D1116 (2023)

    Google Scholar 

  17. Wilkinson, M.D., et al.: The fair guiding principles for scientific data management and stewardship. Sci. Data 3(1), 1–9 (2016)

    Article  Google Scholar 

  18. Zhou, C., et al.: GTDB: an integrated resource for glycosyltransferase sequences and annotations. Database 2020, 219704410 (2020)

    Google Scholar 

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Correspondence to Vincent-Nam Dang .

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Dang, VN., Aussenac-Gilles, N., Ravat, F. (2023). Multi-disciplinary Research: Open Science Data Lake. In: Abelló, A., et al. New Trends in Database and Information Systems. ADBIS 2023. Communications in Computer and Information Science, vol 1850. Springer, Cham. https://doi.org/10.1007/978-3-031-42941-5_7

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  • DOI: https://doi.org/10.1007/978-3-031-42941-5_7

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