Abstract
Satellite tracking technologies enable scientists to collect data of animal migrations and species habitats on a large scale. Modeling distributions of wild animals is of considerable use. It helps researchers to understand important ecological phenomena such as the spread of bird flu and climate changes. Species distribution modeling has been studied for a long time, however, most existing work provide solutions in a point-wise manner, ignoring the relevance between adjacent habitats, which may reflect an important dependency between nearby places. In this paper, we take the relevance into consideration, and then propose a novel method to model species habitats and predict possible distribution of wild animals by applying the Spatial Bagging of Multiple Conditional Random Fields(SBMCRFs) on remote-sensing data. To access the usability of our method, several experiments are implemented on a real world dataset of migratory birds from Qinghai Lake Reserve. The experiment results show that SBMCRFs outperforms the baselines significantly, and the relevance between nearby places is demonstrated to be an important factor in species distribution modeling.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Similar content being viewed by others
References
Busby, J.: BIOCLIM a bioclimate analysis and prediction system. Plant Prot. Q., 6 (1991)
Carpenter, G., Gillison, A.N., Winter, J.: DOMAIN: a flexible modelling procedure for mapping potential distributions of plants and animals. Biodivers. Conserv. 2(6), 667–680 (1993)
Etherington, T.R., Ward, A.I., Smith, G.C., Pietravalle, S., Wilson, G.J.: Using the Mahalanobis distance statistic with unplanned presence only survey data for biogeographical models of species distribution and abundance: a case study of badger setts. J. Biogeogr. 36(5), 845–853 (2009)
Elith, J., Leathwick, J.R., Hastie, T.: A working guide to boosted regression trees. J. Anim. Ecol. 77(4), 802–813 (2008)
Pencina, M.J., D’Agostino, R.B., Vasan, R.S.: Evaluating the added predictive ability of a new marker: from area unde the ROC curve to reclassification and beyond. Stat. Med. 27(2), 157–172 (2008)
Zheng, V.W., Zheng, Y., Xie, X., Yang, Q. Collaborative location, activity recommendations with GPS history data. In: Proceedings of the 19th International Conference on World Wide Web, pp. 1029–1038. ACM (2010)
Li, Z., Han, J., Ji, M., Tang, L.A., Yu, Y., Ding, B., Kays, R.: Movemine: mining moving object data for discovery of animal movement patterns. ACM Trans. Intell. Syst. Technol. (TIST) 2(4), 37 (2011)
Tang, M., Zhou, Y., Li, J., Wang, W., Cui, P., Hou, Y., Yan, B.: Exploring the wild birds migration data for the disease spread study of H5N1: a clustering and association approach. Knowl. Inf. Syst. 27(2), 227–251 (2011)
Tang, M.J., Zhou, Y.C., Cui, P., Wang, W., Li, J., Zhang, H., Hou, Y.S., Yan, B.P.: Discovery of migration habitats and routes of wild bird species by clustering and association analysis. In: Huang, R., Yang, Q., Pei, J., Gama, J., Meng, X., Li, X. (eds.) ADMA 2009. LNCS, vol. 5678, pp. 288–301. Springer, Heidelberg (2009)
Tang, M.J., Wang, W., Jiang, Y., Zhou, Y., Li, J., Cui, P., Liu, Y., Yan, B.: Birds bring flues? mining frequent and high weighted cliques from birds migration networks. In: Kitagawa, H., Ishikawa, Y., Li, Q., Watanabe, C. (eds.) DASFAA 2010. LNCS, vol. 5982, pp. 359–369. Springer, Heidelberg (2010)
Pearson, R.G.: Species distribution modeling for conservation educators and practitioners. Lessons in Conservation (LinC) Developing the capacity to sustain the earth’s diversity, 54 (2007)
Elith, J., Leathwick, J.R.: Species distribution models: ecological explanation and prediction across space and time. Annu. Rev. Ecol. Evol. Syst. 40, 677–697 (2009)
Caruana, R., Elhawary, M., Munson, A., Riedewald, M., Sorokina, D., Fink, D., Hochachka, W.M., Kelling, S.: Mining citizen science data to predict orevalence of wild bird species. In: Proceedings of the 12th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, pp. 909–915. ACM, NewYork (2006)
Kumar, S., Hebert, M.: Discriminative random fields. Int. J. Comput. Vision 68(2), 179–201 (2006)
Lafferty, J., McCallum, A., Pereira, F.C.: Conditional random fields,: Probabilistic models for segmenting and labeling sequence data. In: Proceedings of the Eighteenth International Conference on Machine Learning, ICML 01, pp. 282–289. CA, USA, Morgan Kaufmann Publishers Inc, San Francisco (2001)
Phillips, S.J., Anderson, R.P., Schapire, R.E.: Maximum entropy modeling of species geographic distributions. Ecol. Model. 190(3), 231–259 (2006)
Besag, J.: On the statistical analysis of dirty pictures. J. R. Stat. Soc. Ser. B (Methodol.) 48(3), 259–302 (1986)
Acknowledgments
This work is partly supported by the Natural Science Foundation of China (NSFC) under Grant No. 41371386 and 91224006.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2016 Springer International Publishing Switzerland
About this paper
Cite this paper
Guo, D., Zhou, Y., Zhu, Y., Li, J. (2016). Species Distribution Modeling via Spatial Bagging of Multiple Conditional Random Fields. In: Navathe, S., Wu, W., Shekhar, S., Du, X., Wang, S., Xiong, H. (eds) Database Systems for Advanced Applications. DASFAA 2016. Lecture Notes in Computer Science(), vol 9643. Springer, Cham. https://doi.org/10.1007/978-3-319-32049-6_27
Download citation
DOI: https://doi.org/10.1007/978-3-319-32049-6_27
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-319-32048-9
Online ISBN: 978-3-319-32049-6
eBook Packages: Computer ScienceComputer Science (R0)