Location via proxy:   [ UP ]  
[Report a bug]   [Manage cookies]                
Skip to main content

Representation of the Signal Transduction with Aberrance Using Ipi Calculus

  • Conference paper
Computational and Information Science (CIS 2004)

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 3314))

Included in the following conference series:

Abstract

The pi calculus has been applied to modelling biochemical networks. In these applications, the modelling is done without considerations to exceptions. The Ipi calculus, the Interference pi calculus, is introduced to describe the signal transduction with aberrance. The calculus is obtained by adding two aberrant actions into the pi calculus and a tag system to check existing aberrance. A model of the signal transduction, RTK-MAPK, with the aberrant Ras is highlighted to illustrate the expressive power of the Ipi calculus.

The work is supported by the Young Scientist Research Fund (60225012) and BDCC (03DZ14025).

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

Similar content being viewed by others

References

  1. Milner, R., Parrow, J., Walker, D.: A Calculus of Mobile Processes, parts I and II. Information and Computation, 1–77 (1992)

    Google Scholar 

  2. Priami, C., Regev, A., Silverman, W., Shapiro, E.: Application of a stochastic name passing calculus to representation and simulation of molecular processes. Information Processing Letters 80, 25–31 (2001)

    Article  MATH  MathSciNet  Google Scholar 

  3. Regev, A.: Representation and simulation of molecular pathways in the stochastic pi calculus. In: Proceedings of the 2nd workshop on Computation of Biochemical Pathways and Genetic Networks (2001)

    Google Scholar 

  4. Regev, A., Silverman, W., Shapiro, E.: Representing biomolecular processes with computer process algebra: pi calculus programs of signal transduction pathways (2000), http://www.wisdom.weizmann.ac.il/~aviv/papers.htm

  5. Regev, A., Silverman, W., Shapiro, E.: Representation and simulation of biochemical processes using the pi calculus process algebra. In: Proceedings of the Pacific Symposium of Biocomputing, vol. 6, pp. 459–470 (2001)

    Google Scholar 

  6. Sangiorgi, D., Walker, D.: The pi calculus: a Theory of Mobile Process. Cambridge University Press, Cambridge (2001)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2004 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Zhang, M., Li, G., Fu, Y., Zhang, Z., He, L. (2004). Representation of the Signal Transduction with Aberrance Using Ipi Calculus. In: Zhang, J., He, JH., Fu, Y. (eds) Computational and Information Science. CIS 2004. Lecture Notes in Computer Science, vol 3314. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-30497-5_75

Download citation

  • DOI: https://doi.org/10.1007/978-3-540-30497-5_75

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-24127-0

  • Online ISBN: 978-3-540-30497-5

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics