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Modelling Self-assembly in BlenX

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Transactions on Computational Systems Biology XII

Part of the book series: Lecture Notes in Computer Science ((TCSB,volume 5945))

Abstract

The process through which disordered components spontaneously arrange themselves into patterns is called self-assembly. Molecular self-assembly describes the process by which molecules adopt a defined arrangement without external guidance (e.g. formation of membranes and protein complexes). These biological processes are essential to the functioning of cells. We investigate the usage of BlenX, a process calculi based programming language, for modelling molecular self-assembly of filaments, trees and rings. Moreover, we show how these structures can be used to model actin polymerization.

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Author information

Authors and Affiliations

  1. CoSBi, 38123, Povo, (TN), Italy

    Roberto Larcher, Corrado Priami & Alessandro Romanel

  2. DISI, Università di Trento, 38123, Povo, (TN), Italy

    Roberto Larcher, Corrado Priami & Alessandro Romanel

Authors
  1. Roberto Larcher
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  2. Corrado Priami
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  3. Alessandro Romanel
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Editor information

Editors and Affiliations

  1. Centre for Computational and Systems Biology, The Microsoft Research - University of Trento, Piazza Manci, 17, 38050, Povo (TN), Italy

    Corrado Priami

  2. Groningen Bioinformatics, University of Groningen, Centre, Kerklaan 30, 9751 NN, Haren, The Netherlands

    Rainer Breitling

  3. School of Information Systems, Brunel University, Kingston Lane, UB8 3PH, Uxbridge, UK

    David Gilbert

  4. Computer Science Institute, Brandenburg University of Technology, Walther-Pauer-Str. 2, 03046, Cottbus, Germany

    Monika Heiner

  5. Institute of Computer Science, University of Rostock, Joachim-Jungius-Str.10, 18059, Rostock, Germany

    Adelinde M. Uhrmacher

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Larcher, R., Priami, C., Romanel, A. (2010). Modelling Self-assembly in BlenX . In: Priami, C., Breitling, R., Gilbert, D., Heiner, M., Uhrmacher, A.M. (eds) Transactions on Computational Systems Biology XII. Lecture Notes in Computer Science(), vol 5945. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-11712-1_5

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  • DOI: https://doi.org/10.1007/978-3-642-11712-1_5

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-11711-4

  • Online ISBN: 978-3-642-11712-1

  • eBook Packages: Computer ScienceComputer Science (R0)

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