Abstract
Proper archiving or later reconstruction and verification of results in data analysis requires thorough logging of all manipulative actions on the data and corresponding parameter settings. Unfortunately such documentation tasks often enforce extensive and error prone manual activities by the user. To overcome these problems we present Alida, an approach for fully automatic documentation of data analysis procedures. Based on an unified operator interface all operations on data including their sequence and configurations are registered during analysis. Subsequently these data are made explicit in XML graph representations yielding a suitable base for visual and analytic inspection. As example for the application of Alida in practice we present MiToBo , a toolbox for image analysis implemented on the basis of Alida and demonstrating the advantages of automatic documentation for image analysis procedures.
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Brandes, U., Eiglsperger, M., Herman, I., Himsolt, M., Marshall, M.: GraphML progress report structural layer proposal. In: Goodrich, M.T., Kobourov, S.G. (eds.) GD 2002. LNCS, vol. 2528, pp. 109–112. Springer, Heidelberg (2002)
Brazma, A., Hingamp, P., Quackenbush, J., Sherlock, G., Spellman, P., et al.: Minimum information about a microarray experiment (MIAME) - toward standards for microarray data. Nature Genetics 29(4), 365–371 (2001)
Buchholz, F., Spafford, E.: On the role of file system metadata in digital forensics. Digital Investigation 1(4), 298–309 (2004)
Glaß, M., Möller, B., Zirkel, A., Wächter, K., Hüttelmaier, S., Posch, S.: Scratch Assay Analysis with Topology-Preserving Level Sets and Texture Measures. In: Vitrià, J., Sanches, J.M., Hernández, M. (eds.) IbPRIA 2011. LNCS, vol. 6669, pp. 100–108. Springer, Heidelberg (2011)
Konstantinides, K., Rasure, J.: The Khoros software development environment for image and signal processing. IEEE Trans. on Image Processing 3(3), 243–252 (1994)
Linkert, M., Rueden, C., et al.: Metadata matters: access to image data in the real world. The Journal of Cell Biology 189, 5777–5782 (2010)
Möller, B., Stöhr, N., Hüttelmaier, S., Posch, S.: Cascaded segmentation of grained cell tissue with active contour models. In: Proceedings International Conference on Pattern Recognition (ICPR), pp. 1481–1484 (2010)
Narayanasamy, S., Pereira, C., Patil, H., Cohn, R., Calder, B.: Automatic logging of operating system effects to guide application-level architecture simulation. In: Proc. of the Joint Int. Conf. on Measurement and Modeling of Computer Systems, SIGMETRICS 2006/Performance 2006, pp. 216–227. ACM, New York (2006)
Open Microscopy Environment: OME schemas (2011), http://www.openmicroscopy.org/Schemas (accessed March 17, 2011)
Pedrinaci, C., Lambert, D., Wetzstein, B., van Lessen, T., Cekov, L., Marin, D.: SENTINEL: a semantic business process monitoring tool. In: Proc. of 1st Int. Workshop on Ontology-supported Business Intelligence, OBI 2008 (2008)
Satoh, K., Okumura, A.: Documentation know-how sharing by automatic process tracking. In: Proc. of 4th Int. Conf. on Intelligent User Interfaces, pp. 49–56 (1999)
Taylor, C., Paton, N., Lilley, K., et al.: The minimum information about a proteomics experiment (MIAPE). Nat. Biotechnol. 25, 887–893 (2007)
Warfield, S., Zou, K., Wells, W.: Validation of image segmentation by estimating rater bias and variance. Phil. Trans. R. Soc. A 366(1874), 2361–2375 (2008)
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Möller, B., Greß, O., Posch, S. (2011). Knowing What Happened - Automatic Documentation of Image Analysis Processes. In: Crowley, J.L., Draper, B.A., Thonnat, M. (eds) Computer Vision Systems. ICVS 2011. Lecture Notes in Computer Science, vol 6962. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-23968-7_1
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DOI: https://doi.org/10.1007/978-3-642-23968-7_1
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