Abstract
This paper presents a method for segmenting abdominal organs from 3D abdominal CT images based on atlas selection and graph cut. The training samples are divided into multiple clusters based on the image similarity. The average image and atlas for each cluster are created. For an input image, we select the most similar atlas to the input image by measuring the image similarity between the input and average images. Segmentation of organs based on the MAP estimation using the selected atlas is then performed, followed by the precise segmentation by the graph cut algorithm. We applied the proposed method to a hundred cases of CT images. The experimental results showed that the extraction accuracy could be improved using multiple atlases, achieving more than 90% of the precision rate except for the pancreas.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
Similar content being viewed by others
References
Park, H., Bland, P.H., Meyer, C.R.: Construction of an abdominal probabilistic atlas and its application. IEEE Transactions on Medical Imaging 22(4), 483–492 (2003)
Okada, T., Yokota, K., Hori, M., Nakamoto, M., Nakamura, H., Sato, Y.: Construction of Hierarchical Multi-Organ Statistical Atlases and Their Application to Multi-Organ Segmentation from CT Images. In: Metaxas, D., Axel, L., Fichtinger, G., Székely, G. (eds.) MICCAI 2008, Part I. LNCS, vol. 5241, pp. 502–509. Springer, Heidelberg (2008)
Boykov, Y., Jolly, M.P.: Interactive graph cuts for optimal boundary and region segmentation of objects in n-d images. In: ICCV, pp. 105–112 (2001)
Boykov, Y., Veksler, O., Zabih, R.: Efficient approximate energy minimization via graph cuts. IEEE Transactions on PAMI 20(12), 1222–1239 (2001)
Shimizu, A., Kimoto, T., Kobatake, H., Nawano, S., Shinozaki, K.: Automated pancreas segmentation from three-dimensional contrast-enhanced computed tomography. International Journal of Computer Assisted Radiology and Surgery 5(1), 85–98 (2010)
Aljabar, P., Heckemann, R.A., Hammers, A., Hajnal, J.V., Rueckert, D.: Multi-atlas based segmentation of brain images: Atlas selection and its effect on accuracy. NeuroImage 46, 726–738 (2009)
Glocker, B., Komodakis, N., Tziritas, G., Navab, N., Paragios, N.: Dense image registration through MRFs and efficient linear programming. Medical Image Analysis 12(6), 731–741 (2008)
Shi, J., Malik, J.: Normalized cuts and image segmentation. IEEE Transactions on PAMI 22, 888–905 (1997)
Guimond, A., Meunier, J., Thirion, J.P.: Average brain models: A convergence study. Computer Vision and Image Understanding 77(77), 192–210 (1999)
Dempster, A.P., Laird, N.M., Rubin, D.B.: Maximum likelihood from incomplete data via the EM algorithm. Journal of the Royal Statistical Society, B 39(1), 1–38 (1977)
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2012 Springer-Verlag Berlin Heidelberg
About this paper
Cite this paper
Oda, M. et al. (2012). Organ Segmentation from 3D Abdominal CT Images Based on Atlas Selection and Graph Cut. In: Yoshida, H., Sakas, G., Linguraru, M.G. (eds) Abdominal Imaging. Computational and Clinical Applications. ABD-MICCAI 2011. Lecture Notes in Computer Science, vol 7029. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-28557-8_23
Download citation
DOI: https://doi.org/10.1007/978-3-642-28557-8_23
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-642-28556-1
Online ISBN: 978-3-642-28557-8
eBook Packages: Computer ScienceComputer Science (R0)