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Organ Segmentation from 3D Abdominal CT Images Based on Atlas Selection and Graph Cut

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Abdominal Imaging. Computational and Clinical Applications (ABD-MICCAI 2011)

Abstract

This paper presents a method for segmenting abdominal organs from 3D abdominal CT images based on atlas selection and graph cut. The training samples are divided into multiple clusters based on the image similarity. The average image and atlas for each cluster are created. For an input image, we select the most similar atlas to the input image by measuring the image similarity between the input and average images. Segmentation of organs based on the MAP estimation using the selected atlas is then performed, followed by the precise segmentation by the graph cut algorithm. We applied the proposed method to a hundred cases of CT images. The experimental results showed that the extraction accuracy could be improved using multiple atlases, achieving more than 90% of the precision rate except for the pancreas.

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References

  1. Park, H., Bland, P.H., Meyer, C.R.: Construction of an abdominal probabilistic atlas and its application. IEEE Transactions on Medical Imaging 22(4), 483–492 (2003)

    Article  Google Scholar 

  2. Okada, T., Yokota, K., Hori, M., Nakamoto, M., Nakamura, H., Sato, Y.: Construction of Hierarchical Multi-Organ Statistical Atlases and Their Application to Multi-Organ Segmentation from CT Images. In: Metaxas, D., Axel, L., Fichtinger, G., Székely, G. (eds.) MICCAI 2008, Part I. LNCS, vol. 5241, pp. 502–509. Springer, Heidelberg (2008)

    Chapter  Google Scholar 

  3. Boykov, Y., Jolly, M.P.: Interactive graph cuts for optimal boundary and region segmentation of objects in n-d images. In: ICCV, pp. 105–112 (2001)

    Google Scholar 

  4. Boykov, Y., Veksler, O., Zabih, R.: Efficient approximate energy minimization via graph cuts. IEEE Transactions on PAMI 20(12), 1222–1239 (2001)

    Article  Google Scholar 

  5. Shimizu, A., Kimoto, T., Kobatake, H., Nawano, S., Shinozaki, K.: Automated pancreas segmentation from three-dimensional contrast-enhanced computed tomography. International Journal of Computer Assisted Radiology and Surgery 5(1), 85–98 (2010)

    Article  Google Scholar 

  6. Aljabar, P., Heckemann, R.A., Hammers, A., Hajnal, J.V., Rueckert, D.: Multi-atlas based segmentation of brain images: Atlas selection and its effect on accuracy. NeuroImage 46, 726–738 (2009)

    Article  Google Scholar 

  7. Glocker, B., Komodakis, N., Tziritas, G., Navab, N., Paragios, N.: Dense image registration through MRFs and efficient linear programming. Medical Image Analysis 12(6), 731–741 (2008)

    Article  Google Scholar 

  8. Shi, J., Malik, J.: Normalized cuts and image segmentation. IEEE Transactions on PAMI 22, 888–905 (1997)

    Google Scholar 

  9. Guimond, A., Meunier, J., Thirion, J.P.: Average brain models: A convergence study. Computer Vision and Image Understanding 77(77), 192–210 (1999)

    Google Scholar 

  10. Dempster, A.P., Laird, N.M., Rubin, D.B.: Maximum likelihood from incomplete data via the EM algorithm. Journal of the Royal Statistical Society, B 39(1), 1–38 (1977)

    MathSciNet  MATH  Google Scholar 

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Oda, M. et al. (2012). Organ Segmentation from 3D Abdominal CT Images Based on Atlas Selection and Graph Cut. In: Yoshida, H., Sakas, G., Linguraru, M.G. (eds) Abdominal Imaging. Computational and Clinical Applications. ABD-MICCAI 2011. Lecture Notes in Computer Science, vol 7029. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-28557-8_23

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  • DOI: https://doi.org/10.1007/978-3-642-28557-8_23

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-28556-1

  • Online ISBN: 978-3-642-28557-8

  • eBook Packages: Computer ScienceComputer Science (R0)

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