Abstract
Accumulating evidence has demonstrated the essential role of long noncoding RNAs (lncRNAs) in various types of human cancer, including pancreatic cancer (PC). However, the functions and regulatory mechanisms of nuclear receptor subfamily 2 group F member 1 antisense RNA 1 (NR2F1-AS1) that are responsible for its role in the malignant progression of PC cells remains to be investigated. In this study, the biological effects of NR2F1-AS1 and NR2F1 in PC were investigated by in vitro and in vivo experiments. The mechanisms of NR2F1-AS1 were monitored by bioinformatic predictive analysis and confirmatory experiments. Our results indicated that NR2F1-AS1 was overexpressed and positively correlated with poor survival in PC. Depletion of NR2F1-AS1 restrained PC cell proliferation, migration, invasion, and suppressed xenograft tumor growth and metastasis in vitro and in vivo. Mechanistic experiments suggested that NR2F1-AS1 positively regulated the neighboring NR2F1 gene, which subsequently activated AKT/mTOR signaling, resulting in the upregulation of hypoxia-inducible factor-1α (HIF-1α). Further investigations elucidated that NR2F1-AS1 expression was transcriptionally regulated by HIF-1α under hypoxia. These findings demonstrated that hypoxia-induced NR2F1-AS1 expression directly increased NR2F1 levels to promote PC cell proliferation, migration, and invasion by activating AKT/mTOR signaling. Together, these findings suggest that NR2F1-AS1 could be a prospective therapeutic target for PC.
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Introduction
Pancreatic cancer (PC) is among the most fatal malignancies, ranking among the top ten causes of all cancer-associated mortality, with early local infiltration and distant metastasis being the predominant reasons for death [1]. The vast majority of PC patients already have advanced-staged disease upon diagnosis, which is an indicator of poor prognosis [2]. At later stages, tumor cells are more likely to have migrated to nerves, blood vessels, and distant organs, and local tissue infiltration negatively impacts survival outcomes in PC patients [3]. Nevertheless, the underlying molecular mechanisms that trigger PC invasion and metastasis remain unclear. Therefore, exploring these molecular mechanisms is momentous for identifying prognostic biomarkers and developing treatments for advanced PC.
Recently, long noncoding RNAs (lncRNAs) have been revealed to be pivotal moderators of cancer evolvement due to their multitudinous functions and mechanisms [4]. LncRNAs participate in multiple biological processes through extensive mechanisms, such as cell proliferation, differentiation, apoptosis, invasion, and maintenance of stem cell pluripotency [5]. Numerous studies have manifested that lncRNAs are crucial molecules involved in gene regulation, including in the recruitment of chromatin-modifying complexes and transcriptional co-regulators [6]. Specifically, accumulating reports have demonstrated that numerous differentially regulated lncRNAs are involved in malignant progression and correlate with prognosis in PC patients [7]. For instance, TP53TG1 acts as an oncogene that accelerates PC proliferation, migration, and invasion by interplaying with miR-96 to regulate KRAS network expression [8]. LncRNA-HOTAIR is upregulated in PC and participates as an oncogene in cancer progression and chemotherapy resistance through multiple mechanisms [9]. Studies have indicated that lncRNAs have extensive functions that mediate PC progression, and thus could serve as either prognostic markers or therapeutic targets. Therefore, shedding light on the molecular mechanism of lncRNAs is of great significance for future prognostic and therapeutic modalities in PC.
Hypoxia is a peculiarity of the tumor microenvironment that drives a series of malignant phenotypes such as excessive proliferation, angiogenesis, metastasis, metabolic reprogramming, and immune escape [10]. Hypoxia-inducible factor (HIF)-1α and -2α are two key factors that mediate the responses of cells to hypoxia [11]. In addition, hypoxia-induced lncRNAs have been found to have important impacts on the HIF pathway, tumorigenesis, and cancer progression [12]. For instance, lncRNA metastasis-associated protein 2 transcriptional regulator (MTA2TR) is elevated and facilitates PC progression through a mechanism that is related to the reciprocal regulation of HIF-1α [13]. Another recent study revealed that NR2F1-AS1 was increased under hypoxia and contributed to hypoxia-triggered glycolysis and migration via regulating the miR-140/HK2 pathway in hepatocellular carcinoma (HCC) [14]. However, how lncRNAs interact with hypoxia moderators during PC progression has remained largely elusive.
Nuclear receptor subfamily 2 group F member 1 antisense RNA 1 (NR2F1-AS1) is a natural antisense transcript (NAT) lncRNA that has been reported to serve as a carcinogenic factor in several types of malignant tumors, including HCC [14, 15], osteosarcoma [16], endometrial cancer [17], colorectal cancer [18], and breast cancer [19, 20]. In this work, we performed bioinformatic analysis to screen lncRNAs that are differentially expressed in PC and identified NR2F1-AS1 as an upregulated lncRNA that was associated with poor prognosis in PC patients. Furthermore, chromatin immunoprecipitation (ChIP)-sequencing and The Cancer Genome Atlas (TCGA) data followed by bioinformatic analysis revealed that NR2F1-AS1 was associated with hypoxia and metastasis. We show that NR2F1-AS1 enhanced the expression of its neighbor gene NR2F1, which subsequently activates the AKT/mTOR pathway to facilitate PC progression. Moreover, we further elucidated that NR2F1-AS1 was transcriptionally induced by HIF-1α under hypoxic conditions, thereby promoting the malignant progression of hypoxic PC cells. Therefore, our results implicate that NR2F1-AS1 contributes to PC development through NR2F1 and the AKT/mTOR pathway, which involved in a hypoxic microenvironment, providing a potential prognostic biomarker and therapeutic target for PC.
Materials and methods
Patients and clinical samples
Ninety paired PC and matched paracancerous tissue samples were collected from patients who were diagnosed with PC and underwent resection at the Affiliated Hospital of Guizhou Medical University between 2018 and 2020. All PC tissues were confirmed by the histopathological reports. The collected tissues were quickly stored in a â80â°C freezer. This study was approved by the Institutional Review Board of the Affiliated Hospital of Guizhou Medical University before sample collection (IRB: No. 2018â017), and all patients had provided written informed consent.
Cell lines and cell culture
The human PC cell lines BxPC-3, Capan-2, CFPAC-1, SW1990, MIA PaCa-2, and PANC-1 were purchased from the American Type Culture Collection (Manassas, VA, USA), while the human pancreatic duct epithelial (HPDE) cells were purchased from Shanghai Cell Bank of the Chinese Academy of Sciences (Shanghai, China). According to ATCC suggestions, the cell lines were cultured in complete growth medium. Cells were cultured at 37â°C in a humidified atmosphere of 5% CO2. The indicated cells were also cultured in 1% O2, 5% CO2, and 94% N2 or treated with 100âμM CoCl2 [21] (Sigma-Aldrich, St. Louis, MO, USA) to induce hypoxia.
In situ hybridization (ISH)
ISH was performed using the RNA ISH Kit according to the manufacturerâs direction (Exiqon, Germany). Briefly, the tissue chips were baked at 63â°C for 1âh, and then xylene was used for dewaxing, and reagent grade dilute ethanol was used for rehydration. The slides were then digested with 5âμg/mL protease K at 37â°C for 2âmin, dehydrated, and then incubated with 20ânM double (5â²- and 3â²-) DIG-labeled oligonucleotide ISH probe for NR2F1-AS1 (Supplementary Table S1) in hybridization buffer at 50â°C for 1âh, followed by washing and incubation with anti-DIG-AP Fab fragment antibody overnight at 4â°C. Finally, BCIP/NBT Substrate developing solution was applied to the sections for signal detection and incubated at 37â°C for 30âmin. Images were captured using an Aperio ImageScope system.
RNA fluorescence ISH (RNA-FISH)
RNA-FISH was performed using the Ribo⢠lncRNA FISH Probe Mix (Red) (Guangzhou RiboBio Co., Ltd., Guangdong, China) according to the manufacturerâs instructions and suggestions. The indicated cells were seeded into 24-well plates at 6âÃâ104 cells/well and cultured until they reached 60 to 70% confluence. Cells were then fixed in 4% paraformaldehyde and treated with precooled PBS containing 0.5% Triton X-100 at 4â°C for 5âmin. After being incubated with prehybridization and hybridization solutions, respectively, the cells were incubated with the lncRNA NR2F1-AS1 FISH probe mix (20âμM) at 37â°C overnight. Then the cells were washed with SSC hybrid washing buffer solution for 5âmin. After being washed with PBST, an anti-fluorescence quencher was added, and then the cells were observed using a fluorescence microscope (Olympus, Tokyo, Japan).
Cell transfection and infection
Small interfering RNAs (siRNAs) and appropriate negative control (NC) were obtained from RiboBio and transfected into cells using riboFECT⢠CP Buffer (RiboBio) according to the manufacturerâs protocol. Short hairpin RNAs (shRNAs) containing NR2F1-AS1 mimics, NC mimics, sh-Control, sh-NR2F1-AS1#1, and NR2F1-AS1#2 lentivirus were provided by Shanghai Genechem Co., Ltd. (Shanghai, China). Cells were infected with shRNAs or mimics using infection booster solutions Hitrans G, A, or P according to the manufacturerâs instructions. After 12â16âh, the medium was replaced with complete medium. Total RNA and protein were extracted at 24 or 48âh post-infection for downstream analyses. The siRNA sequences used in this study are listed in Supplementary Table S2.
Immunofluorescence (IF) staining
Cells were fixed in 4% formaldehyde and washed with 1à PBST for 30âmin. The cells were blocked with 5% bovine serum albumin (BSA) for 2âh, and then incubated with primary anti-E-cadherin, anti-Vimentin, or anti-NR2F1 antibodies (Supplementary Table S3) at 4â°C for 18â24âh. After being washed with 1à PBST, fluorescent FITC-conjugated AffiniPure goat anti-rabbit IgG (Hâ+âL) secondary antibody was added and incubated for 45âmin. The cells were again washed and incubated with DAPI (Invitrogen, Carlsbad, CA, USA) for nuclear staining. The cells were visualized using a fluorescence microscope (Olympus).
Xenograft models experiment
For subcutaneous xenograft PC models, PANC-1 or MIA PaCa-2 (5âÃâ106 cells/mouse) cells that had been transfected with sh-Control, sh-NR2F1-AS1#1, or sh-NR2F1-AS1#2 were subcutaneously injected into the right flank of female nude BALB/c mice (4â6-weeks-old, HFK Bio-Technology Co., Ltd, Beijing, China). To establish the metastasis model, 5âÃâ106 PANC-1 or MIA PaCa-2 cells stably expressing sh-Control or shRNAs were transplanted into the spleen through the splenic envelope. BALB/c nude mice were then randomly divided into three groups with five mice per group. Tumor volumes of the mice were monitored every week after implantation. Tumor growth was detected weekly by bioluminescent imaging with a Xenogen IVIS (PerkinElmer, Waltham, MA, USA). Five weeks after implantation, the mice were sacrificed, and the xenograft tumors were collected and measured. All animal experiments were carried out in accordance with the principles and procedures authorized by the Animal Experimental Ethics Committee of Guizhou Medical University.
Dual-luciferase reporter assay
Using the hypoxia response elements (HREs) in the NR2F1-AS1 promoter region, we constructed a wild-type (WT) and mutated (MUT) sequence containing two putative HIF-1α binding sequences into pGL3-based vectors (RiboBio). Luciferase reporter plasmid pGL3-based vectors expressing NR2F1-AS1-WT or MUT were co-transfected into MIA PaCa-2 and PANC-1 cells in 96-well plates with siNC or siHIF-1α. After 24âh, cells were cultured under normoxia or hypoxia for an additional 24âh. Cell lysates were harvested, and firefly and Renilla luciferase activities were measured using the dual-luciferase reporter system kit (Beyotime, Shanghai, China) on a microplate reader according to the manufacturerâs suggestions and protocols. The Renilla luciferase internal control was used to normalize luciferase activity.
Statistical analyses
All results are shown as meanâ±âstandard deviation (SD) and represent the results of three independent experiments. Statistical analyses were performed using GraphPad Prism 8.0 (GraphPad Software, Inc., San Diego, CA, USA) and SPSS 22.0 software (IBM Corp., Armonk, NY, USA). Fisherâs exact test (two-sided) or the Chi-square test were used to analyze correlations between NR2F1-AS1 expression levels and clinicopathological features of PC patients. KaplanâMeier curves and the log-rank test were used to analyze overall survival rates. Pearsonâs correlation analysis was adopted for correlation analysis between genes. Studentâs t test or one-way ANOVA were used for statistical comparisons between different groups. The data met all assumptions of the tests, respectively. A P value <â0.05 was used to indicate significant differences (*Pâ<â0.05, **Pâ<â0.01, and ***Pâ<â0.001).
Results
NR2F1-AS1 expression is enhanced in PC tissue and cell lines
According to TCGA data accessed via the GEPIA website, we identified NR2F1-AS1 to have markedly higher expression in pancreatic adenocarcinoma (PAAD) samples (Fig. 1A). Moreover, high NR2F1-AS1 expression was also verified in several other PC and metastatic tumor Gene Expression Omnibus (GEO) databases (GSE15471, GSE16515, GSE58561, GSE91035, and GSE63124) (Supplementary Fig. S1AâH). Furthermore, using TCGA data, KaplanâMeier analysis implied that patients with high NR2F1-AS1 expression had a poor prognosis (Fig. 1B, C). Nevertheless, the results from TCGA data, as shown in Supplementary Fig. S1IâL, indicated that NR2F1-AS1 expression was not correlated with lymph node metastasis, tumor stage, metastasis stage, or histologic grade. To validate these bioinformatic analysis results, increased NR2F1-AS1 expression was confirmed by quantitative real-time polymerase chain reaction (qRT-PCR) and ISH in PC tissues and cell lines (Fig. 1DâF). KaplanâMeier analysis showed that high NR2F1-AS1 expression in PC patients was associated with a lower survival rate (Fig. 1G). On the basis of the clinicopathologic characteristics of PC patients, we found that high NR2F1-AS1 expression was associated with large tumor size and perineural invasion (Supplementary Table S4). In addition, we performed RNA-FISH and RNA extraction from specific cell fractions to confirm the localization of NR2F1-AS1. These results revealed that NR2F1-AS1 was mostly cytoplasmic in PC cells (Fig. 1H, I). Collectively, these results suggested that NR2F1-AS1 was abnormally elevated in PC cells and might be a potential biomarker of pancreatic malignancy.
NR2F1-AS1 promotes the proliferation, migration, and invasion of PC cells in vitro
To elucidate the function of NR2F1-AS1 on cell biological behaviors, we generated stable MIA PaCa-2 and PANC-1 cell lines with lentiviral-mediated NR2F1-AS1 silencing (sh-NR2F1-AS1#1 and sh-NR2F1-AS1#2) or control (sh-Control) with verified the knockdown efficiency (Supplementary Fig. S2A). Functional assays using these cell lines revealed that NR2F1-AS1 depletion remarkably inhibited PC cell proliferation (Fig. 2AâC). Moreover, subsequent overexpression of NR2F1-AS1 could salvage the impaired proliferation ability of NR2F1-AS1-downregulated cells (Supplementary Fig. S3AâC). Next, wound-healing and transwell assays demonstrated that NR2F1-AS1 knockdown suppressed the migration and invasion capacities of PC cells (Fig. 2D, E); both phenotypes were also rescued by re-expressing NR2F1-AS1 (Supplementary Fig. S3DâG). Epithelial-to-mesenchymal transition (EMT) is a crucial feature of tumor invasion and metastasis. Therefore, western blot and IF assays were used to examine EMT markers, including E-cadherin and Vimentin. The results demonstrated that silencing NR2F1-AS1 facilitated E-cadherin expression but decreased Vimentin expression (Fig. 2F and Supplementary Fig. S2B, C). Taken together, these results demonstrated that silencing NR2F1-AS1 weakened the tumorigenicity of PC cells in vitro.
Depletion of NR2F1-AS1 suppressed PC cell proliferation and metastasis in vivo
To further explore whether NR2F1-AS1 affected the proliferation of PC cells in vivo, PANC-1 and MIA PaCa-2 cells stably transfected with a lentiviral vector containing sh-NR2F1-AS1#1, sh-NR2F1-AS1#2, or sh-Control were inoculated into nude mice. Five weeks after implantation, the mean volume and weight of tumors in the NR2F1-AS1-knockdown groups were substantially lower than those from the control group (Fig. 3AâC and Supplementary Fig. S4AâC). Immunohistochemistry (IHC) results showed a visible decrease in PCNA and Ki-67 expression in xenograft tumor tissues from the NR2F1-AS1-knockdown groups compared with control tumors (Fig. 3D and Supplementary Fig. S4D). Moreover, the metastatic model indicated that fluorescence intensity was dramatically decreased in livers of mice injected with NR2F1-AS1 knockdown cells compared with in the control group, and histological examination verified the presence or absence of liver and lung metastases in the groups (Fig. 3EâH and Supplementary Fig. S4EâH). These results indicated that depletion of NR2F1-AS1 suppressed the growth and metastasis of PC cells in vivo, which further validated the carcinogenesis of NR2F1-AS1 in PC progression.
NR2F1 is a target of NR2F1-AS1 and is positively regulated by NR2F1-AS1
Previous reports have revealed that antisense lncRNAs can mediate the expression and chromatin state of genes nearby their own transcription site (in-cis) [22]. Bioinformatics analysis (http://asia.ensembl.org/index.html) showed that NR2F1-AS1 was adjacent to the NR2F1 gene, located on the antisense strand of NR2F1 (Fig. 4A). Analysis of the GEO and TCGA databases also demonstrated that NR2F1 was overexpressed in PC tissues (Fig. 4B and Supplementary Fig. S5A, B), which was confirmed by qRT-PCR, IHC, and western blot assays (Fig. 4CâF and Supplementary Fig. S5C). To further clarify the correlation between NR2F1-AS1 and NR2F1, Pearsonâs analysis indicated that NR2F1-AS1 and NR2F1 expression levels showed a positive correlation in PC tissues (Fig. 4G, H and Supplementary Fig. S5D, E). Accordingly, qRT-PCR, western blot, and IF assays illustrated that NR2F1 mRNA and protein expression were dramatically decreased in NR2F1-AS1-knockdown cells (Fig. 4I, J and Supplementary Fig. S5F, G). Taken together, these results suggested that NR2F1-AS1 plays a critical role in regulating the expression of its sense homologous gene, NR2F1.
Silencing NR2F1 attenuates the proliferation, migration, and invasion of PC cells
Given the close genomic proximity of NR2F1-AS1 and NR2F1, we hypothesized that NR2F1-AS1 could exert its effects by modulating NR2F1. NR2F1 knockdown was achieved in PC cells using two siRNAs; knockdown was verified at the mRNA and protein levels (Supplementary Fig. S6A, B). As shown in a series of functional assays, silencing NR2F1 resulted in significantly slower growth and fewer colonies (Fig. 5AâC). Wound-healing and transwell assays demonstrated that NR2F1 knockdown reduced the migratory and invasive activities of PC cells (Fig. 5DâF). Therefore, the above results indicated that NR2F1 might be a critical target of NR2F1-AS1 in its tumor-promoting role in PC.
NR2F1-AS1/NR2F1 activates the AKT/mTOR pathway in PC cells
To identify intracellular pathways that might mediate the effects of NR2F1 in PC cells, we performed bioinformatic analysis of similar genes from the TCGA-PAAD dataset. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway and correlation analysis showed that NR2F1-AS1 and NR2F1 were associated with the PI3K/AKT pathway (Fig. 6A and Supplementary Fig. S7A). Western blot analysis of MIA PaCa-2 and PANC-1 cells revealed that levels of the active, phosphorylated (p) forms of AKT, mTOR, and p70 S6K, and HIF-1α protein expression were obviously increased in PC cells overexpressing NR2F1-AS1 but were decreased in NR2F1-AS1-knockdown cells (Fig. 6B and Supplementary Fig. S7B, C). Thus, we hypothesized that NR2F1-AS1/NR2F1 might regulate PC progression by activating the PI3K/AKT pathway. Rescue experiments showed that both silencing NR2F1 and the PI3K inhibitor LY294002 blocked the NR2F1-AS1-mediated increased proliferation, migration, and invasion capacity of PC cells (Fig. 6CâF). Western blot analysis revealed that NR2F1, HIF-1α, p-AKT, p-mTOR, and p-p70 S6K levels were increased in NR2F1-AS1-overexpressing cells but were decreased in cells with NR2F1 knockdown (Fig. 6G and Supplementary Fig. S7D, E). Furthermore, our results indicated that LY294002 treatment could reverse the upregulation of p-AKT, p-mTOR, p-p70 S6K, and HIF-1α induced by NR2F1-AS1-overexpression but could not rescue the expression of NR2F1 (Fig. 6G and Supplementary Fig. S7D, E). Moreover, IHC analysis of 76 PC tissues indicated that NR2F1-AS1 expression was positively correlated with NR2F1 and HIF-1α (Supplementary Fig. S7F, G). These results indicated that NR2F1-AS1 promoted cell proliferation and invasion through NR2F1-mediated activation of AKT/mTOR signaling in PC cells.
Hypoxia is positively correlated with NR2F1-AS1 expression
To understand the regulatory mechanism that caused NR2F1-AS1 overexpression in PC, we used Gene Ontology (GO) enrichment analysis to discover that NR2F1-AS1 was responsive to hypoxia (Fig. 7A). Notably, HIF-1α expression, a critical regulator of hypoxia, was positively correlated with NR2F1-AS1 (Fig. 7B). Thus, we next analyzed the NR2F1-AS1 promoter using the JASPAR database, which identified two HREs in the NR2F1-AS1 promoter region (Fig. 7C and Supplementary Table S5). Subsequent results revealed that NR2F1-AS1 and HIF-1α expression were raised remarkably by incubating PC cells in a hypoxic microenvironment treatment for 24âh (Fig. 7D, E and Supplementary Fig. S8A). Next, we transfected PC cells with three different siRNAs targeting HIF-1α, and the interference efficiencies were verified by qRT-PCR and western blot (Supplementary Fig. S8BâD). Moreover, qRT-PCR and RNA-FISH results demonstrated that HIF-1α knockdown obviously inhibited NR2F1-AS1 expression in both normoxia and hypoxia conditions (Fig. 7F, G and Supplementary Fig. S8E). Western blot assays confirmed that HIF-1α expression was decreased in HIF-1α-silenced cells (Fig. 7H and Supplementary Fig. S8F, G). Luciferase reporter assays showed that hypoxia significantly enhanced the transcription of NR2F1-AS1-WT, which was repressed by HIF-1α knockdown (Fig. 7I). These data elucidated that NR2F1-AS1 is a hypoxia-responsive lncRNA in PC cells.
NR2F1-AS1 participated in the hypoxia-induced metastasis of PC cells
Next, we investigated the involvement of HIF-1α in the migration and invasion of PC cells by performing rescue experiments. The results revealed that NR2F1 and Vimentin expression were enhanced but E-cadherin was reduced under hypoxia, which was strikingly reversed by NR2F1-AS1 knockdown (Fig. 8A, B and Supplementary Fig. S9A, B). Similarly, the expression of NR2F1, Vimentin, and E-cadherin were restored in HIF-1α-silenced PC cells under hypoxia condition; overexpressing NR2F1-AS1 partially reversed the effect of HIF-1α knockdown in these cells (Supplementary Fig. S9CâE). We further explored the effect of hypoxia and HIF-1α on PC cell migration and invasion. Wound-healing and transwell assays demonstrated that hypoxia obviously enhanced the migration and invasion abilities of PC cells compared with cells cultured in normoxia; however, this effect was inhibited by knockdown of NR2F1-AS1 (Fig. 8C, D). Furthermore, silencing HIF-1α decreased the migration and invasion abilities induced by hypoxia, which were partially rescued by NR2F1-AS1 overexpression (Supplementary Fig. S10A, B). Therefore, the results all above implicate that NR2F1-AS1 participates in the hypoxia-induced metastasis of PC cells.
Discussion
At present, many dysregulated lncRNAs have received extensive attention to elucidate their roles in the initiation and development of cancers [23]. Previously, NR2F1-AS1 was reported to play oncogenic roles in promoting the growth and metastasis of cancer [14,15,16,17,18,19,20]. Interestingly, Liu et al. found that NR2F1-AS1 is overexpressed in dormant mesenchymal-like breast cancer stem-like cells, where it functions to facilitate tumor dissemination but reduce proliferation, in a process that also involved NR2F1 [19]. In this study, we discovered that NR2F1-AS1 was highly expressed and positively correlated with larger tumor size, perineural invasion, and poor survival in PC. We further demonstrated that NR2F1-AS1 knockdown suppressed PC cell proliferation and metastasis in vitro and in vivo. Meanwhile, high NR2F1-AS1 expression facilitated hypoxia-induced EMT, migration, and invasion in PC cells. These data support our conclusion that NR2F1-AS1 may be an oncogene in PC, and thus it could be a potential prognostic biomarker for this disease.
Antisense lncRNAs have been reported to regulate the expression of their respective sense genes at multiple levels according to their subcellular localization [24]. For instance, the lncRNA EGFR-AS1 promotes the expression of EGFR by whittling the degradation of EGFR mRNA, thereby accelerating bladder cancer metastasis [25]. Wanowska et al. revealed that certain OIP5-AS1 splicing forms act as a scaffold for the SWI/SNF chromatin remodeling complex, which binds to the OIP5 promoter, thus promoting its transcription [26]. Meanwhile, we found that NR2F1-AS1 is an antisense transcript of NR2F1 that is located in the opposite strand of DNA, meaning NR2F1-AS1 could cis-regulate its neighbor NR2F1. Notably, we observed that NR2F1 was positively modulated by NR2F1-AS1 at both the mRNA and protein levels. We further explored the mechanism by which NR2F1-AS1 regulated NR2F1 expression and verified that NR2F1 is a pivotal target of NR2F1-AS1 in PC but understanding the underlying molecular mechanism will require further investigation.
Previous studies have confirmed that NR2F1 is a transcription factor [27], and it has been found to be an oncoprotein in various tumors [28]. In our functional assays, NR2F1 depletion repressed the proliferation, migration, invasion, and rescued the phenotypes mediated by NR2F1-AS1. Based on KEGG pathway analysis, we found that both NR2F1-AS1 and NR2F1 were significantly related to the PI3K/AKT pathway, which controls key cellular processes such as metabolism, growth, invasion, and the survival, expansion, and spread of cancer cells [29]. Previous studies have demonstrated that lncRNA NR2F1-AS1 can influence breast and gastric cancer progression by activating insulin-like growth factor-1 (IGF-1)/IGF-1R/ERK [20], MAP3K2 [30], and AKT3 [31], which crosstalk with AKT. We also verified that NR2F1-AS1 promoted AKT/mTOR signaling, indicating that NR2F1-AS1 is a critical gene for the growth and metastasis of PC. Then, various functional rescue assays confirmed that AKT/mTOR signaling controlled key components through which NR2F1-AS1/NR2F1 drove PC progression. On the basis of these data, we concluded that NR2F1-AS1 continuously triggered activation of AKT/mTOR signaling by promoting NR2F1 expression. Interestingly, previous studies have confirmed that AKT/mTOR signaling stimulates HIF-1α mRNA expression and enhances HIF-1α protein stability [32, 33]. Therefore, we further explored the effect of NR2F1-AS1 on HIF-1α protein levels. As expected, silencing NR2F1-AS1 inhibited HIF-1α protein expression, while overexpressing NR2F1-AS1 promoted HIF-1α expression. In addition, the expression of HIF-1α was partially diminished by NR2F1 knockdown and LY294002 treatment in NR2F1-AS1-overexpressing cells. Taken together, these data suggest a novel mechanism through which NR2F1-AS1 facilitates PC progression by promoting the expression of its neighbor NR2F1, which then activates the AKT/mTOR/HIF-1α axis.
The tumor microenvironment is an important feature of solid tumors that can activate the expression of specific genes to regulate various biological behaviors [34, 35]. Numerous studies have revealed that lncRNAs are upregulated by a hypoxic microenvironment, thereby promoting the occurrence and development of cancers, including PC [12, 36, 37]. According to one study, lincRNA-p21 is a hypoxia-responsive lncRNA that conversely regulates the stability of HIF-1α protein [38]. As our bioinformatics analysis predicted two potential HREs in the NR2F1-AS1 promoter, we further investigated whether NR2F1-AS1 was a hypoxia-sensitive lncRNA in PC cells. Our results showed that the expression and transcriptional activity of NR2F1-AS1 were elevated under hypoxia, owing to HIF-1α binding to the NR2F1-AS1 promoter. These data confirmed that NR2F1-AS1 regulates HIF-1α expression by modulating the activity of the AKT/mTOR pathway in PC. These findings are consistent with the concept of HIF-1α transcriptional activation of target lncRNAs and suggest a reciprocal feedback mechanism between NR2F1-AS1 and HIF-1α in PC cells under hypoxia.
In summary, this study demonstrated that NR2F1-AS1 is a novel hypoxia-inducible lncRNA that is highly expressed and related to poor prognosis in PC patients. NR2F1-AS1 is regulated by HIF-1α and promotes PC cell proliferation, migration, and invasion by maintaining the expression of its sense gene NR2F1, which activates the AKT/mTOR pathway (Fig. 9). Our data describe a novel mechanism for PC progression, which might be beneficial for discovering therapeutic targets.
Data availability
The datasets used and analyzed during this study are available from the corresponding author on reasonable request.
References
Siegel RL, Miller KD, Fuchs HE, Jemal A. Cancer Statistics, 2021. CA: A Cancer J Clin. 2021;71:7â33..
Mizrahi JD, Surana R, Valle JW, Shroff RT. Pancreatic cancer. Lancet. 2020;395:2008â20.
Wang Y, Yang G, You L, Yang J, Feng M, Qiu J, et al. Role of the microbiome in occurrence, development and treatment of pancreatic cancer. Mol Cancer. 2019;18:173.
Anastasiadou E, Jacob LS, Slack FJ. Non-coding RNA networks in cancer. Nat Rev Cancer. 2018;18:5â18.
Statello L, Guo CJ, Chen LL, Huarte M. Gene regulation by long non-coding RNAs and its biological functions. Nat Rev Mol Cell Biol. 2021;22:96â118.
Taniue K, Akimitsu N. The functions and unique features of LncRNAs in cancer development and tumorigenesis. Int J Mol Sci. 2021;22:632.
Zhou W, Chen L, Li C, Huang R, Guo M, Ning S, et al. The multifaceted roles of long noncoding RNAs in pancreatic cancer: an update on what we know. Cancer Cell Int. 2020;20:41.
Zhang Y, Yang H, Du Y, Liu P, Zhang J, Li Y, et al. Long noncoding RNA TP53TG1 promotes pancreatic ductal adenocarcinoma development by acting as a molecular sponge of microRNA-96. Cancer Sci. 2019;110:2760â72.
Jiang D, Xu L, Ni J, Zhang J, Cai M, Shen L. Functional polymorphisms in LncRNA HOTAIR contribute to susceptibility of pancreatic cancer. Cancer Cell Int. 2019;19:47.
Satija S, Kaur H, Tambuwala MM, Sharma P, Vyas M, Khurana N, et al. Hypoxia-inducible factor (HIF): fuel for cancer progression. Curr Mol Pharmacol. 2021;14:321â32.
Ma Z, Wang LZ, Cheng JT, Lam WST, Ma X, Xiang X, et al. Targeting hypoxia-inducible factor-1-mediated metastasis for cancer therapy. Antioxid Redox Signal. 2021;34:1484â97.
Kuo TC, Kung HJ, Shih JW. Signaling in and out: long-noncoding RNAs in tumor hypoxia. J Biomed Sci. 2020;27:59.
Zeng Z, Xu FY, Zheng H, Cheng P, Chen QY, Ye Z, et al. LncRNA-MTA2TR functions as a promoter in pancreatic cancer via driving deacetylation-dependent accumulation of HIF-1α. Theranostics. 2019;9:5298â314.
Li X, Li Y, Bai S, Zhang J, Liu Z, Yang J. NR2F1-AS1/miR-140/HK2 axis regulates hypoxia-induced glycolysis and migration in hepatocellular carcinoma. Cancer Manag Res. 2021;13:427â37.
Huang H, Chen J, Ding CM, Jin X, Jia ZM, Peng J. LncRNA NR2F1-AS1 regulates hepatocellular carcinoma oxaliplatin resistance by targeting ABCC1 via miR-363. J Cell Mol Med. 2018;22:3238â45.
Li S, Zheng K, Pei Y, Wang W, Zhang X. Long noncoding RNA NR2F1-AS1 enhances the malignant properties of osteosarcoma by increasing forkhead box A1 expression via sponging of microRNA-483-3p. Aging. 2019;11:11609â23.
Wang L, Zhao S, Mingxin YU. LncRNA NR2F1-AS1 is involved in the progression of endometrial cancer by sponging miR-363 to target SOX4. Die Pharmazie. 2019;74:295â300.
Wang J, Dong S, Zhang J, Jing D, Wang W, Dong L, et al. LncRNA NR2F1-AS1 regulates miR-371a-3p/TOB1 axis to suppress proliferation of colorectal cancer cells. Cancer Biother Radiopharm. 2020;35:760â4.
Liu Y, Zhang P, Wu Q, Fang H, Wang Y, Xiao Y, et al. Long non-coding RNA NR2F1-AS1 induces breast cancer lung metastatic dormancy by regulating NR2F1 and ÎNp63. Nat Commun. 2021;12:5232.
Zhang Q, Li T, Wang Z, Kuang X, Shao N, Lin Y. lncRNA NR2F1-AS1 promotes breast cancer angiogenesis through activating IGF-1/IGF-1R/ERK pathway. J Cell Mol Med. 2020;24:8236â47.
Wu D, Yotnda P. Induction and testing of hypoxia in cell culture. J Vis Exp.: JoVE. 2011;54:e2899.
Engreitz JM, Haines JE, Perez EM, Munson G, Chen J, Kane M, et al. Local regulation of gene expression by lncRNA promoters, transcription and splicing. Nature. 2016;539:452â5.
Choudhari R, Sedano MJ, Harrison AL, Subramani R, Lin KY, Ramos EI, et al. Long noncoding RNAs in cancer: From discovery to therapeutic targets. Adv Clin Chem. 2020;95:105â47.
Pelechano V, Steinmetz LM. Gene regulation by antisense transcription. Nat Rev Genet. 2013;14:880â93.
Wang A, Jiang A, Gan X, Wang Z, Huang J, Dong K, et al. EGFR-AS1 promotes bladder cancer progression by upregulating EGFR. Biomed Res Int. 2020;2020:6665974.
Wanowska E, Kubiak M, Makalowska I, Szczesniak MW. A chromatin-associated splicing isoform of OIP5-AS1 acts in cis to regulate the OIP5 oncogene. RNA Biol. 2021;18:1834â45.
Alfano C, Magrinelli E, Harb K, Studer M. The nuclear receptors COUP-TF: a long-lasting experience in forebrain assembly. Cell Mol Life Sci. 2014;71:43â62.
Sosa MS, Parikh F, Maia AG, Estrada Y, Bosch A, Bragado P, et al. NR2F1 controls tumour cell dormancy via SOX9- and RARbeta-driven quiescence programmes. Nat Commun. 2015;6:6170.
Janku F, Yap TA, Meric-Bernstam F. Targeting the PI3K pathway in cancer: are we making headway? Nat Rev Clin Oncol. 2018;15:273â91.
Liao X, Wen L, Luo L. The effect and mechanism of lncRNA NR2F1-As1/miR-493-5p/MAP3K2 axis in the progression of gastric cancer. J Oncol. 2021;2021:3881932.
Lv J, Zhang S, Liu Y, Li C, Guo T, Zhang S, et al. NR2F1-AS1/miR-190a/PHLDB2 induces the epithelial-mesenchymal transformation process in gastric cancer by promoting phosphorylation of AKT3. Front Cell Dev Biol. 2021;9:688949.
Agani F, Jiang B-H. Oxygen-independent regulation of HIF-1: novel involvement of PI3K/AKT/mTOR pathway in cancer. Curr Cancer Drug Targets. 2013;13:245â51.
Zhou L, Wang Y, Zhou M, Zhang Y, Wang P, Li X, et al. HOXA9 inhibits HIF-1α-mediated glycolysis through interacting with CRIP2 to repress cutaneous squamous cell carcinoma development. Nat Commun. 2018;9:1480.
Patel A, Sant S. Hypoxic tumor microenvironment: opportunities to develop targeted therapies. Biotechnol Adv. 2016;34:803â12.
Emami Nejad A, Najafgholian S, Rostami A, Sistani A, Shojaeifar S, Esparvarinha M, et al. The role of hypoxia in the tumor microenvironment and development of cancer stem cell: a novel approach to developing treatment. Cancer Cell Int. 2021;21:62.
Wang X, Zhao D, Xie H, Hu Y. Interplay of long non-coding RNAs and HIF-1α: a new dimension to understanding hypoxia-regulated tumor growth and metastasis. Cancer Lett. 2021;499:49â59.
Chang YN, Zhang K, Hu ZM, Qi HX, Shi ZM, Han XH, et al. Hypoxia-regulated lncRNAs in cancer. Gene. 2016;575:1â8.
Yang F, Zhang H, Mei Y, Wu M. Reciprocal regulation of HIF-1α and lincRNA-p21 modulates the Warburg effect. Mol Cell. 2014;53:88â100.
Acknowledgements
We acknowledge the generous support of the Department of Hepatobiliary Surgery of the Affiliated Hospital of Guizhou Medical University, Guiyang, Guizhou, China. We thank James P. Mahaffey, PhD, from Liwen Bianji (Edanz) (www.liwenbianji.cn) for editing the English text of a draft of this manuscript.
Funding
This study was funded by the National Natural Science Foundation of China (No. 81860505, 82060439, awarded to CS; and 81960433, awarded to ZH); Project of Graduate Research Fund of Guizhou Province in 2020 (grant number: Qian Jiao He YJSCXJH [2020] 151, awarded to SC and grant number: Qian Jiao He YJSCXJH [2020] 154, awarded to CZ).
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CS and YL contributed to the experimental design and data analysis. YL, SC, and KC contributed to the experiment implementation, and DZ contributed to drafting the manuscript and data analysis. CZ, LL, WF, ZH, and CY read and approved the final manuscript.
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This study was reviewed and approved by the Ethics Committee of the Affiliated Hospital of Guizhou Medical University, Guiyang, China. All animal studies were approved by the Animal Experimental Ethics Committee of Guizhou Medical University.
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Liu, Y., Chen, S., Cai, K. et al. Hypoxia-induced long noncoding RNA NR2F1-AS1 maintains pancreatic cancer proliferation, migration, and invasion by activating the NR2F1/AKT/mTOR axis. Cell Death Dis 13, 232 (2022). https://doi.org/10.1038/s41419-022-04669-0
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DOI: https://doi.org/10.1038/s41419-022-04669-0
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