Abstract
Methods of construction of support vector machines (SVMs) require no additional a priori information and allow large volumes of multidimensional data to be processed, which is especially important for solving various problems in computational biology. The main algorithms of SVM construction for binary classification are reviewed. The issue of the quality of the SVM learning algorithms is considered, and a description of proposed algorithms is given that is sufficient for their practical implementation. Comparative analysis of the efficiency of support vector classifiers is presented.
Similar content being viewed by others
References
N. O. Kadyrova and L. V. Pavlova, Biophysics (Moscow) 59(3), 364 (2014).
V. N. Vapnik, The Nature of Statistical Learning Theory (Springer, 2000).
A. Elisseeff and M. Pontil, in Advances in Learning Theory: Methods, Models and Applications, Ed. by J. A. K. Suykens et al. (2003), p. 111.
T. Joachims, in Proc. 17th Int. Conf. on Machine Learning (Stanford, CA, 2000), p. 431.
T. Fawcett, in ROC Graphs: Notes and Practical Considerations for Researchers (Kluwer, 2004), p. 1.
J. Davis and M. Goadrich, in Proc. 23rd Int.. Conf. on Machine Learning (Pittsburgh, PA, 2006).
E. Osuna, R. Freund, and F. Girosi, in Proc. of IEEE NNSP’97 (Amelia Island, FL, 1997), p. 279.
T. Joachims, in Advances in Kernel Methods — Support Vector Learning (MIT Press, 1998), p. 41.
J. C. Platt, in Advances in Kernel Methods — Support Vector Learning (MIT Press, 1999), p. 185.
J. Platt, in Advances in Neural Information Processing Systems, Vol. 11 (MIT Press, 1999), p. 557.
S. Keerthi, S. Shevade, C. Bhattacharyya, and K. Murthy, Technical Report CD-99-14 (1999), p. 1 (1999).
P.-H. Chen, R.-E. Fan, and C.-J. Lin, Lecture Notes in Artifical Intelligence 3734, 45 (2005).
S. Keerthi and E. Gilbert, Machine Learning 46(1–3), 351 (2002).
O. Mangasarian and D. Musicant, IEEE Trans. Neural Networks 10(5), 1032 (1999).
O. Mangasarian and D. Musicant, in Applications and Algorithms of Complementarity, Ed. by M.C. Ferris, O.L. Mangasarian, and J.-S. Pang (Kluwer, Boston 2000). ftp://ftp.cs.wisc.edu/math-prog/tech-reports/99-03.ps.
G. Cauwenberghs and T. Tomaso Poggio, in Advances in Neural Information Processing Systems, Vol. 13 (MIT Press, 2001), p. 409.
P. Laskov, C. Gehl, S. Krüger, and K.-R. Müller, J. Mach. Learn. Res. 7, 1909 (2005).
G. H. Golub and C. F. van Loan, Matrix Computations, 3rd ed. (Johns Hopkins Univ. Press, Baltimore, 1996).
J. Kivinen, S. Smola, and R. Williamson, IEEE Trans. Signal Process. 52(8), 2165 (2004).
S. Vishwanathan, N. Schraudolph, and A. Smola, J. Mach. Learn. Res. 6, 1 (2005).
A. Karatzoglou, D. Meyer, and K. Hornik, J. Stat. Soft. 15(9), 1 (2006).
http://www.bioconductor.org/packages/devel/bioc/html/MLSeq.html.
Author information
Authors and Affiliations
Corresponding author
Additional information
Original Russian Text © N.O. Kadyrova, L.V. Pavlova, 2015, published in Biofizika, 2015, Vol. 60, No. 1, pp. 18–31.
Rights and permissions
About this article
Cite this article
Kadyrova, N.O., Pavlova, L.V. Comparative efficiency of algorithms based on support vector machines for binary classification. BIOPHYSICS 60, 13–24 (2015). https://doi.org/10.1134/S0006350915010145
Received:
Published:
Issue Date:
DOI: https://doi.org/10.1134/S0006350915010145