2020 10th International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB 2020) was held in Kyoto University, Kyoto, Japan during January 19-22, 2020. The event was a great success and there were many participants from all over the world. ICBBB 2020 provided the communication platform for international researchers, engineers, academicians as well as industrial professionals who are interested in bioscience, biochemistry, bioinformatics and related fields.
Proceeding Downloads
Relationship between Dynamics of Structures and Dynamics of Hydrogen Bonds in Hras-GTP/GDP Complex
Hras protein is an intermediate for signals of cell proliferation and cell differentiation when Hras combines with guanosine triphosphate (GTP). In ordinary cells, GTP combined with Hras is hydrolyzed to guanosine diphosphate (GDP), and the structures ...
Improvement of Protein Stability Prediction by Integrated Computational Approach
Mutation of a single amino acid residue may change protein structure which affect protein function and diseases. Increasing protein stability or maintaining its stability while changing protein properties is often a goal in protein engineering, drug ...
Computational Drug-target Interaction Prediction based on Graph Embedding and Graph Mining
Identification of interactions of drugs and proteins is an essential step in the early stages of drug discovery and in finding new drug uses. Traditional experimental identification and validation of these interactions are still time-consuming, ...
Docking Simulation of Chemerin-9 and ChemR23 Receptor
Chemerin-9 is a nonapeptide that corresponds to the YFPGQFAFS sequence on the C-terminus of Chemerin protein. Recent clinical and animal studies using mice, it has been recently reported that Chemerin-9 binds to the ChemR23 receptor and can suppress the ...
Efficient GPU Acceleration for Computing Maximal Exact Matches in Long DNA Reads
The seeding heuristic is widely used in many DNA analysis applications to speed up the analysis time. In many applications, seeding takes a substantial amount of the total execution time. In this paper, we present an efficient GPU implementation for ...
Comparing Dissimilarity Metrics for Clustering Gene into Functional Modules using Machine Learning
Clustering is widely used in biological analyses for clustering genes into functional modules. For any clustering mechanism, we need to define some measurements for dissimilarity. The two most commonly used dissimilarity metrics are the Manhattan ...
A Method for the Inverse QSAR/QSPR Based on Artificial Neural Networks and Mixed Integer Linear Programming
- Rachaya Chiewvanichakorn,
- Chenxi Wang,
- Zhe Zhang,
- Aleksandar Shurbevski,
- Hiroshi Nagamochi,
- Tatsuya Akutsu
In this study, we proposeanovel method for the inverse QSAR/QSPR. Given a set of chemical compounds G and their values a(G) of a chemical property, we define a feature vector f(G) of each chemical compound G. By using a set of feature vectors as ...
Rapid Detection and Prediction of Influenza A Subtype using Deep Convolutional Neural Network based Ensemble Learning
Seasonal pandemics of influenza A viruses bring enormous threaten to human healthy. Different subtypes of influenza A viruses disseminated in human have variable susceptibilities to antiviral drug, so rapid subtyping of influenza A viruses has been ...
Using Multiple Machine Learning Algorithms for Cancer Prognosis in Lung Adenocarcinoma
Lung cancer is the most prevailing source of death due to cancer, accounting for over 25% of death in the United States. Being able to predict the survival time for patients will provide valuable information for the choice of their treatment plans and ...
Identification of the Association between Hepatitis B Virus and Liver Cancer using Machine Learning Approaches based on Amino Acid
Primary liver cancer has been a common reason for death from cancer globally. The most common type of primary liver cancer is the hepatocellular carcinoma (HCC). The major cause of HCC is chronic infections with hepatitis B virus (HBV). In this research,...
Using Gene-level to Generalize Transcript-level Classification Performance on Multiple Colorectal Cancer Microarray Studies
Several classification algorithms have been applied into microarray studies for colorectal cancer identification. Algorithms such as naïve bayes, random forest, logistic regression, support vector machine, and deep learning have been successfully used ...
Predicting lncRNA-disease Association based on Extreme Gradient Boosting
There is increasing evidence that long non-coding RNAs (lncRNAs) play an important role in many significant biological processes. Associations' detection between lncRNAs and human diseases by computational models is beneficial to the identification of ...
Corpus Construction of Precision Medicine
[Background]For advancing biomedical text-mining research, formal evaluations and manually annotated text corpus are critically important. In terms of biomedical corpus construction, in order to meet different needs, many scholars have built different ...
Breast Cancer Subtype by Imbalanced Omics Data through A Deep Learning Fusion Model
Breast cancer is a highly heterogeneous disease that consists of subtypes with distinct genetic features and clinical symptoms. The patients with different subtypes react to different therapies, thus identifying molecular subtypes greatly contributes to ...
Optimization of Cold-adapted α-amylase Production in Escherichia coli by Regulation of Induction Conditions and Supplement with Osmolytes
In this study, the induction expression conditions of cold-adapted α-amylase (Amy175) from Pseudoalteromonas sp. M175 in E. coli were investigated. The optimal induction conditions were as follows: 20 mM L-proline was added into the culture medium at ...
Computational Modeling of Myocardial Thermal lesion Induced by Multi-source Frequency Control RF ablation Method
In minimally invasive surgery for atrial fibrillation, radiofrequency (RF) voltage is usually used to ablate cardiac tissue. In this study, a computational modeling of multi-source frequency control RF ablation mode (FcM) was constructed to analyze the ...
Assessing Information Quality and Distinguishing Feature Subsets for Molecular Classification
A feature reduction scheme is developed in this study. The proposed scheme is a hybrid of unsupervised and supervised methods. The unsupervised process is designed to exclude the irrelevant and useless information before executing feature selection. ...
Analyses of Interaction between Platinum Bonded LARFH and Gold Surface by Molecular Dynamics Simulation
- Mao Watabe,
- Keiichi Nobuoka,
- Hironao Yamada,
- Takeshi Miyakawa,
- Ryota Morikawa,
- Masako Takasu,
- Tatsuya Uchida,
- Akihiko Yamagishi
Proteins that specifically bind to metals have been used for research on development of new organic-inorganic hybrid materials. Several peptides and proteins that bind to metals have been reported; this property can be attributed to their structures. In ...
A Mono-bidomain Electrophysiological Simulation Method for Electrical Defibrillation Research
Computational simulation is highly useful to study the mechanisms and methods of electrical defibrillation. However, current simulation methods have considerable limitations, such as inability to obtain the virtual electrode polarization and tremendous ...
A Novel Feature Selection and Classification Method of Alzheimer's Disease based on Multi-features in MRI
In this paper, we describe a novel machine learning method for classifying Alzheimer's disease (AD), Mild cognitive impairment (MCI) and Normal Control (NC) subjects based on structural MRI. We first extracted features from MRI scans, including cortical ...
Rectal Methods of Delivery of Medical Drugs of the Protein Nature
Intravenous injection of protein drugs causes many negative side effects known as infusion reactions and serious consequences, such as serum sickness. This article shows the possibility of intake into the body of recipients of drug preparations of ...
Automatic Brain Mask Segmentation for Mono-modal MRI
In recent years, deep learning methods have gained promising results in different kinds of image processing tasks, such as image classification, semantic segmentation, image generation and so on. This paper focuses on the research of brain masking for ...
Variability of Local Weather as Early Warning for Dengue Hemorrhagic Fever Outbreak in Indonesia
The incidence of Dengue Hemorrhagic Fever (DHF) is related to the alternation of environment condition, particularly weather, in which global warming may elevate the DHF case. The objective of study is to analyses the relationship between local weather ...
The Application and Comparison of Confocal and SIM Imaging System
Optical imaging is a popular method for biology research, and now there lots of optical imaging system. Confocal imaging is a wide used one which was introduced the pinhole and subsequently is not affected by the out-of-focus signal, making the method ...
Exploring Elders' Willingness and Needs for Adopting an Interactive Somatosensory Game into Muscle Rehabilitation Systems
Disease of the lower limb musculoskeletal system is one of the most common diseases in elders. The use of interactive somatosensory games (ISGs) in rehabilitation has been widely used. Most relevant studies have focused on efficacy, while only a few ...
Dynamically Colour Changing Actuator for Cyanosis Baby Manikin Application with the Philips Hue LED Kit
Medical simulation training is an important approach contributing to medical safety. In the field of neonatology, serious efforts have been devoted to construct manikins, which are realistic in shape and improve the haptic experience. As central ...