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How to use Galaxy

How to cite Galaxy

Citing Galaxy

If you use Galaxy@Pasteur please cite doi:10.7490/f1000research.1114334.1

Cluster Load

test

For pasteur users:

  • Instructions on how to import big data here.
  • Galaxy Initiation slides are available here.
  • If you need a new tool or a new genome index for an existing tool (bwa, blast, star...), send an email to Pasteur_galaxy_support.

Warning! When xml are updated, workflows using them must be adapted.

News

Galaxy in Research: Uncovering the evolutionary secrets of wild loquats using comparative chloroplast genomics

A new study has sequenced and analyzed two wild loquat chloroplast genomes, revealing key insights into their evolutionary history and the genetic diversity of loquat species.

Hosting R/Shiny applications on Galaxy (and other frameworks)

Thanks to the outcome of a small Galaxy/Bioconductor hackathon earlier this year, it has become much easier to deploy Shiny applications as interactive tools (ITs) on usegalaxy.eu

Opinion: Conda, Anaconda and the much bigger problem behind it

Anaconda, DockerHub, Quay.io, GitHub ... we need to talk about the sustainability of our infrastructure.

Galaxy in Research: Advancing quantum materials research with Galaxy

At Oak Ridge National Laboratory, scientists have harnessed the power of Galaxy to bring together cutting-edge computing resources, paving the way for new discoveries in quantum materials through advanced neutron scattering data analysis.

Galaxy in Research: Exploring DNA methylation and aging across diverse human tissues

How does DNA methylation correlate with aging across different human tissues? A new study provides insights into this question, revealing tissue-specific and shared epigenetic patterns.

Events

Sep 10 - Sep 13A practical introduction to bioinformatics and RNA-seq using Galaxy

Ready to explore the fascinating world of RNA-seq data analysis using Galaxy? Don't miss out on this incredible opportunity! Visit our event webpage now to discover the program details, meet the organising team, and submit your application.

Sep 10 - Sep 12sc-verse Conference 2024

Join us at the sc-verse Conference in Munich to explore the latest advancements in single-cell analysis with Galaxy. Discover the innovative features Galaxy offers in this cutting-edge field of single-cell research, and be sure to attend our poster session for an in-depth discussion and the opportunity to engage directly with our team.

Sep 11Webinar on data management with DataHub (Onedata)

At 14:00 CEST, join this Webinar if you are interested in the recent Galaxy & Onedata integration (remote data source and Object Store).

Oct 7 - Oct 11Galaxy Training Academy 2024

Are you ready to enhance your data analysis skills? The Galaxy Training Academy is a five-day global online event designed for beginners and those looking to enhance their Galaxy expertise.