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  Discovery of Regulatory Elements by a Computational Method for Phylogenetic Footprinting

  • Mathieu Blanchette and
  • Martin Tompa

  Genome Res. May 1, 2002 12: 739-748; doi:10.1101/gr.6902
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  Transcriptional Regulation of the Stem Cell Leukemia Gene (SCL) — Comparative Analysis of Five Vertebrate SCL Loci

  • Berthold Göttgens,
  • Linda M. Barton,
  • Michael A. Chapman,
  • Angus M. Sinclair,
  • Bjarne Knudsen,
  • Darren Grafham,
  • James G.R. Gilbert,
  • Jane Rogers,
  • David R. Bentley,
  • and Anthony R. Green

  Genome Res. May 1, 2002 12: 749-759; doi:10.1101/gr.45502
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  Determination of Redundancy and Systems Properties of the Metabolic Network of Helicobacter pylori Using Genome-Scale Extreme Pathway Analysis

  • Nathan D. Price,
  • Jason A. Papin,
  • and Bernhard Ø. Palsson

  Genome Res. May 1, 2002 12: 760-769; Published in Advance April 12, 2002, doi:10.1101/gr.218002
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  Evidence Suggesting That a Fifth of Annotated Caenorhabditis elegans Genes May Be Pseudogenes

  • Andrew Mounsey,
  • Petra Bauer,
  • and Ian A. Hope

  Genome Res. May 1, 2002 12: 770-775; Published in Advance April 12, 2002, doi:10.1101/gr208802
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  Analyses of the Extent of Shared Synteny and Conserved Gene Orders between the Genome of Fugu rubripes and Human 20q

  • Sarah F. Smith,
  • Philip Snell,
  • Frank Gruetzner,
  • Anthony J. Bench,
  • Thomas Haaf,
  • Judith A. Metcalfe,
  • Anthony R. Green,
  • and Greg Elgar

  Genome Res. May 1, 2002 12: 776-784; Published in Advance April 12, 2002, doi:10.1101/gr.221802
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  Large-Scale Protein Annotation through Gene Ontology

  • Hanqing Xie,
  • Alon Wasserman,
  • Zurit Levine,
  • Amit Novik,
  • Vladimir Grebinskiy,
  • Avi Shoshan,
  • and Liat Mintz

  Genome Res. May 1, 2002 12: 785-794; doi:10.1101/gr.86902
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  Integration of Cot Analysis, DNA Cloning, and High-Throughput Sequencing Facilitates Genome Characterization and Gene Discovery

  • Daniel G. Peterson,
  • Stefan R. Schulze,
  • Erica B. Sciara,
  • Scott A. Lee,
  • John E. Bowers,
  • Alexander Nagel,
  • Ning Jiang,
  • Deanne C. Tibbitts,
  • Susan R. Wessler,
  • and Andrew H. Paterson

  Genome Res. May 1, 2002 12: 795-807; Published in Advance April 12, 2002, doi:10.1101/gr.226102
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  Protein Coding Palindromes Are a Unique but Recurrent Feature in Rickettsia

  • Hiroyuki Ogata,
  • Stéphane Audic,
  • Chantal Abergel,
  • Pierre-Edouard Fournier,
  • and Jean-Michel Claverie

  Genome Res. May 1, 2002 12: 808-816; Published in Advance April 12, 2002, doi:10.1101/gr.227602
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  A Fine Physical Map of the Rice Chromosome 4

  • Qiang Zhao,
  • Yu Zhang,
  • Zhukuan Cheng,
  • Mingsheng Chen,
  • Shengyue Wang,
  • Qi Feng,
  • Yucheng Huang,
  • Ying Li,
  • Yesheng Tang,
  • Bo Zhou,
  • Zhehua Chen,
  • Shuliang Yu,
  • Jingjie Zhu,
  • Xin Hu,
  • Jie Mu,
  • Kai Ying,
  • Pei Hao,
  • Lei Zhang,
  • Yiqi Lu,
  • Lei S. Zhang,
  • Yilei Liu,
  • Zhen Yu,
  • Danlin Fan,
  • Qijun Weng,
  • Ling Chen,
  • Tingting Lu,
  • Xiaohui Liu,
  • Peixin Jia,
  • Tongguo Sun,
  • Yongrui Wu,
  • Yujun Zhang,
  • Ying Lu,
  • Can Li,
  • Rong Wang,
  • Haiyan Lei,
  • Tao Li,
  • Hao Hu,
  • Mei Wu,
  • Runquan Zhang,
  • Jianping Guan,
  • Jia Zhu,
  • Gang Fu,
  • Minghong Gu,
  • Guofan Hong,
  • Yongbiao Xue,
  • Rod Wing,
  • Jiming Jiang,
  • and Bin Han

  Genome Res. May 1, 2002 12: 817-823; doi:10.1101/gr.48902
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