Name		Name	Last commit message	Last commit date
Latest commit History 992 Commits
BAM_to_CRAM_wrappers		BAM_to_CRAM_wrappers
Delly		Delly
Dockers/ExomeDepth		Dockers/ExomeDepth
ExpansionHunter_configuration		ExpansionHunter_configuration
Lirical		Lirical
MitochondriaPipeline		MitochondriaPipeline
Qualimap		Qualimap
RNA_seq		RNA_seq
ROH		ROH
R_scripts		R_scripts
SCRAMBLE		SCRAMBLE
SMN_caller		SMN_caller
bigWig		bigWig
common/annotation		common/annotation
gatk_cnv		gatk_cnv
manta		manta
mitomap		mitomap
optitype		optitype
references		references
softsearch		softsearch
AnnotationAndCreateVariantInterpretationTable.wdl		AnnotationAndCreateVariantInterpretationTable.wdl
AnnotationPipeline.wdl		AnnotationPipeline.wdl
CRAM_conversions.wdl		CRAM_conversions.wdl
Conifer.wdl		Conifer.wdl
Conifer_OnlyRPKM.wdl		Conifer_OnlyRPKM.wdl
CreateInterpretationTable.wdl		CreateInterpretationTable.wdl
DeepVariant.wdl		DeepVariant.wdl
ExomeDepth.wdl		ExomeDepth.wdl
Exomiser.wdl		Exomiser.wdl
FastqToVCFPipeline_3.wdl		FastqToVCFPipeline_3.wdl
GenerateCRAM.wdl		GenerateCRAM.wdl
MitoMap.wdl		MitoMap.wdl
PrepareMaskedGenomeFiles.wdl		PrepareMaskedGenomeFiles.wdl
Qualimap.wdl		Qualimap.wdl
README.md		README.md
RNA_seq.wdl		RNA_seq.wdl
ROH.wdl		ROH.wdl
TestFastqToVCF.wdl		TestFastqToVCF.wdl
exp_hunter.wdl		exp_hunter.wdl
makeXLSXoutputs.R		makeXLSXoutputs.R
optimised_optitypeDNA		optimised_optitypeDNA
optitype_dna_bam.wdl		optitype_dna_bam.wdl
optitype_dna_fastq.wdl		optitype_dna_fastq.wdl
rnaseq_star_salmon.wdl		rnaseq_star_salmon.wdl

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