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Do we need the sequences table? #281

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childers opened this issue May 10, 2019 · 1 comment
Open

Do we need the sequences table? #281

childers opened this issue May 10, 2019 · 1 comment
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@childers
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After loading hundreds of BLAST databases, our sequences table is getting really, really big.

I think the only reason the sequences table exists is for doing lookup to get the sequence form the input fasta file.

With BLAST+, the blastdbcmd program can return a sequence from the ID, removing the need for the table, and the extra steps on setting up a new database.

What functions use the sequences table?
Can these functions be refactored to use existing BLAST apps, or simplified?

@hsiaoyi0504
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@childers I think this can be closed, right ? It's been duplicate in #288.

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