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After loading hundreds of BLAST databases, our sequences table is getting really, really big.
I think the only reason the sequences table exists is for doing lookup to get the sequence form the input fasta file.
With BLAST+, the blastdbcmd program can return a sequence from the ID, removing the need for the table, and the extra steps on setting up a new database.
What functions use the sequences table?
Can these functions be refactored to use existing BLAST apps, or simplified?
The text was updated successfully, but these errors were encountered:
After loading hundreds of BLAST databases, our sequences table is getting really, really big.
I think the only reason the sequences table exists is for doing lookup to get the sequence form the input fasta file.
With BLAST+, the blastdbcmd program can return a sequence from the ID, removing the need for the table, and the extra steps on setting up a new database.
What functions use the sequences table?
Can these functions be refactored to use existing BLAST apps, or simplified?
The text was updated successfully, but these errors were encountered: