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Hello, I tried fast5_fetcher using follow cmd: python3.6 fast5_fetcher_multi.py -p File.paf.gz -i /name.index --seq_sum sequencing_summary.txt.gz -o ./fast5_fetcher
but the only output i got is the error message: no filenames list built, check inputs
I checked my input files and apparently they look ok.
What could I be doing wrong?
Thank you in advance.
The text was updated successfully, but these errors were encountered:
I found an issue in the summary file. It was malformed, indeed the first column was named “filename_fastq” and not “filename_fast5”. So, the function “get_filenames” did not work.
Hello, I tried fast5_fetcher using follow cmd:
python3.6 fast5_fetcher_multi.py -p File.paf.gz -i /name.index --seq_sum sequencing_summary.txt.gz -o ./fast5_fetcher
but the only output i got is the error message:
no filenames list built, check inputs
I checked my input files and apparently they look ok.
What could I be doing wrong?
Thank you in advance.
The text was updated successfully, but these errors were encountered: