Welcome! This is CytoTools, a small package of utilities for analysis of cytometry data in Python. CytoTools started as a module in the first release of CytoPy.

CytoTools is now a standalone package that provides functions and classes for:

• Reading flow/mass cytometry data into memory
• Transforming flow/mass cytometry data using common methods such as Logicle and Arcsinh
• Dimension reduction
• Geometry tools useful for automated gating
• Down/up-sampling data including density-dependent sampling
• Landmark registration for peak alignment

For more information, check the full documentation here:

The CytoPy ecosystem is under development, see ### for details on release information.