Discover the under-methylated regions in population
-
Updated
Nov 7, 2023 - Python
Discover the under-methylated regions in population
Identifying PMDs using a non-parametric HMM
Lecture given in University of Pittsburgh course Genomics (BIOSC 1250) related to the epigenetic-basis for PTSD, how methylation of cytosines is detected and how epigenetic modifications of PTSD are hereditary.
"DNA methylation and gene expression integration in cardiovascular disease"
I need someone to tell me if this is making things better or worse
This repository contains the code used in the following publication: doi.org/10.1016/j.isci.2022.105487
This repository contains the data and code created during the writing assignment of my master's program (Molecular and cellular life sciences).
Test data for the mint methylation pipeline
Scripts used for the DNA methylation analysis section in the manuscript "Sports activities at a young age decrease hypertension risk – the J-Fit+ study"
Blood-derived DNA methylation-based prediction of midlife dementia risk
Code to estimate Tumor Content end Phenotype Evidence score from samples sequenced with the NEMO panel
Precomputed informative CpG sites and CpG islands to be used with PAMES package
These code are research work in CNDD lab.
Guide for the Baccarelli Lab GitHub
Small minfi wrapper to convert IDAT files to beta values.
WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
Description of the emQTL analysis related to the paper "Epigenetic alterations at distal enhancers are linked to proliferation in human breast cancer".
Add a description, image, and links to the dna-methylation topic page so that developers can more easily learn about it.
To associate your repository with the dna-methylation topic, visit your repo's landing page and select "manage topics."