First, we develop a labeled dual graph representation of RNA secondary structure by adding biologically meaningful labels to the dual graphs proposed by Gan et ...
Sep 22, 2004 · As a representation of RNA secondary structure, the labeled dual graph captures the basic features of the molecule: the number and length of.
In this work we examine whether the basic geometric and topological properties of secondary structure are sufficient to distinguish between RNA families in a ...
Sep 22, 2004 · Some genes produce transcripts that function directly in regulatory, catalytic, or structural roles in the cell. These non-coding RNAs are ...
Classification of non-coding RNA using graph representations of secondary structure. 2004. Karklin, Yan;; Meraz, Richard F.;; Holbrook, Stephen R.
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Apr 1, 2009 · Here, we demonstrate that specific properties of graphs that represent the predicted RNA secondary structure reflect functional information. We ...
It is demonstrated that specific properties of graphs that represent the predicted RNA secondary structure reflect functional information, and GraPPLE may ...
1. Karklin Y, Meraz RF, Holbrook SR: Classification of non-coding RNA using graph representations of secondary structure. Pac Symp Biocomput2005:4-15. 2. Hamada ...
Feb 10, 2021 · This process creates a grey-scale, symmetric image representation of the secondary structure of any given RNA. Fig. 1: Top: an example of ...
