Sep 4, 2014 · We present new algorithms for the problem of multiple string matching of gapped patterns, where a gapped pattern is a sequence of strings ...
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The paper [5] describes howa motif represented as a generalizedPWM can bematched as a set of gapped patternswith unit-length keywords, and presents algorithms ...
May 22, 2024 · Patterns with variable-length gaps must be split into two or more separate motifs before being submitted as input to MAST. MAST takes as input ...
In these models a motif can be matched as a set of gapped patterns with unit-length keywords. The existing algorithms for matching a set of gapped patterns are ...
This work develops a motif discovery algorithm for identifying gapped motifs from organisms with peculiarity in their genomic structure such as the malaria ...
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Sep 17, 2013 · Searching multiple times a pattern in a string via regex in python · 1 · Search/Match regex in Python · 0 · python regex search pattern · 0.
Nov 11, 2016 · I am performing ChIP-Seq analysis of a transcription factor that binds as a dimer to palindromic sequences with variable gap in between. I need ...
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Aug 15, 2016 · So I would need to include the gap positions as regular expressions into the reference sequence and than map it against the test sequence.
The paper [5] describes howa motif represented as a generalizedPWM can bematched as a set of gapped patternswith unit-length keywords, and presents algorithms ...