12 Reconstructing Phylogenies from Gene-Content and Gene-Order Data
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Oct 31, 2023 · Recent developments include generalizations to handle insertions, duplications, and deletions, scaling to large numbers of organisms, and, to a ...
PDF | Gene-order data have been used successfully to reconstruct organellar phylogenies; they offer low error rates, the potential to reach farther back.
Oct 16, 2017 · There exist many computational methods for the reconstruction of gene-order phylogenies, including widely used maximum parsimonious methods and ...
Abstract. Genomes can be viewed in terms of their gene content and the order in which the genes appear along each chromosome. Evolutionary events that affect ...
The state-of-the-art in using gene-order data for phylogenetic reconstruction is surveyed, focusing on recent work by this group that has enabled us to ...
This chapter surveys recent developments in the reconstruction of phylogenies from gene order and content, focusing on their performance under various ...
In this paper, we present a new approach for computing the median of three arbitrary genomes and apply it to the reconstruction of phylogenies from arbitrary ...
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We report on new techniques we have developed for reconstructing phylogenies on whole genomes. Our mathematical techniques include new polynomial-time ...
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We report on our progress in reconstructing phylogenies from gene-order data. We have developed polynomial-time methods for estimating genomic distances.
Nov 8, 2014 · MLGO (Maximum Likelihood for Gene-Order Analysis) is a web tool for the reconstruction of phylogeny and/or ancestral genomes from gene-order data.